Transcript: Human XM_017018378.1

PREDICTED: Homo sapiens RAB1B, member RAS oncogene family (RAB1B), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RAB1B (81876)
Length:
2122
CDS:
155..868

Additional Resources:

NCBI RefSeq record:
XM_017018378.1
NBCI Gene record:
RAB1B (81876)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017018378.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047214 CACGTACACAGAGAGCTACAT pLKO.1 247 CDS 100% 4.950 6.930 N RAB1B n/a
2 TRCN0000299381 CACGTACACAGAGAGCTACAT pLKO_005 247 CDS 100% 4.950 6.930 N RAB1B n/a
3 TRCN0000381705 TATGCTGCACTGGGTTCTCTC pLKO_005 1196 3UTR 100% 4.050 5.670 N RAB1B n/a
4 TRCN0000047217 TGCCAGCGAGAACGTCAATAA pLKO.1 481 CDS 100% 13.200 9.240 N RAB1B n/a
5 TRCN0000299459 TGCCAGCGAGAACGTCAATAA pLKO_005 481 CDS 100% 13.200 9.240 N RAB1B n/a
6 TRCN0000382357 ATGTCGAGCAGGCGTTCATGA pLKO_005 732 CDS 100% 4.950 3.465 N RAB1B n/a
7 TRCN0000047215 GACCATCACTTCCAGCTACTA pLKO.1 367 CDS 100% 4.950 3.465 N RAB1B n/a
8 TRCN0000299460 GACCATCACTTCCAGCTACTA pLKO_005 367 CDS 100% 4.950 3.465 N RAB1B n/a
9 TRCN0000381822 GGCACCTTCTCCAGATGATGT pLKO_005 897 3UTR 100% 4.950 3.465 N RAB1B n/a
10 TRCN0000047213 TCATGGCATCATCGTGGTGTA pLKO.1 397 CDS 100% 4.050 2.835 N RAB1B n/a
11 TRCN0000047216 CATCATCGTGGTGTATGACGT pLKO.1 403 CDS 100% 2.640 1.848 N RAB1B n/a
12 TRCN0000299382 CATCATCGTGGTGTATGACGT pLKO_005 403 CDS 100% 2.640 1.848 N RAB1B n/a
13 TRCN0000100821 GCCAAGAATGCCACCAATGTT pLKO.1 716 CDS 100% 5.625 3.938 N Rab1b n/a
14 TRCN0000302711 GCCAAGAATGCCACCAATGTT pLKO_005 716 CDS 100% 5.625 3.938 N Rab1b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017018378.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04261 pDONR223 100% 84.8% 84.8% None 410_517del n/a
2 ccsbBroad304_04261 pLX_304 0% 84.8% 84.8% V5 410_517del n/a
3 TRCN0000465917 TCTGCGTGGACTTTCAGGGTCAGA pLX_317 52.8% 84.8% 84.8% V5 410_517del n/a
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