Transcript: Human XM_017021057.1

PREDICTED: Homo sapiens spectrin repeat containing nuclear envelope family member 3 (SYNE3), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SYNE3 (161176)
Length:
2828
CDS:
113..1588

Additional Resources:

NCBI RefSeq record:
XM_017021057.1
NBCI Gene record:
SYNE3 (161176)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017021057.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000282854 AGCCTGGGAGCAGCAGATTAA pLKO_005 1105 CDS 100% 13.200 9.240 N SYNE3 n/a
2 TRCN0000179208 GCAGGACATTGCCAAAGATTT pLKO.1 898 CDS 100% 13.200 9.240 N SYNE3 n/a
3 TRCN0000072628 CCTCCCAAAGTGCTAGGATTA pLKO.1 2728 3UTR 100% 10.800 5.400 Y MRPS16 n/a
4 TRCN0000264485 TGCTGCACAACGTGGACAATC pLKO_005 588 CDS 100% 10.800 6.480 N Syne3 n/a
5 TRCN0000140657 CCTCCCAAAGTGCTAGGATAA pLKO.1 2728 3UTR 100% 10.800 5.400 Y CD3EAP n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017021057.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000476789 AGCCACTTGTTGCCACTCCAACCA pLX_317 .8% 50% 49.6% V5 (many diffs) n/a
Download CSV