Transcript: Human XM_017021089.1

PREDICTED: Homo sapiens vasohibin 1 (VASH1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
VASH1 (22846)
Length:
4918
CDS:
281..919

Additional Resources:

NCBI RefSeq record:
XM_017021089.1
NBCI Gene record:
VASH1 (22846)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017021089.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000373847 CAACTGAAGTTTAAGGTATTT pLKO_005 1148 3UTR 100% 13.200 10.560 N VASH1 n/a
2 TRCN0000373930 GGCCTAGAGGCCGTTAGTATT pLKO_005 1105 3UTR 100% 13.200 9.240 N VASH1 n/a
3 TRCN0000139334 CACAGGACATAGTGGTGCTTT pLKO.1 3625 3UTR 100% 4.950 3.465 N VASH1 n/a
4 TRCN0000139620 CTGCCAATCAAATGCCTGGAA pLKO.1 314 CDS 100% 2.640 1.848 N VASH1 n/a
5 TRCN0000144795 GAAATTAAGAAGAGCAGACCT pLKO.1 248 5UTR 100% 2.640 1.848 N VASH1 n/a
6 TRCN0000373848 CAAAGCCATGCCAGACCTTAA pLKO_005 877 CDS 100% 10.800 6.480 N VASH1 n/a
7 TRCN0000139710 CCTACTTCTCAGGGAACTACT pLKO.1 405 CDS 100% 4.950 2.970 N VASH1 n/a
8 TRCN0000139046 CCTGGGAATTTACCTCACCAA pLKO.1 343 CDS 100% 2.640 1.584 N VASH1 n/a
9 TRCN0000140443 GAGCTGCAGTACAATCACACA pLKO.1 212 5UTR 100% 2.640 1.584 N VASH1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017021089.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02692 pDONR223 100% 58% 58% None 0_1ins459 n/a
2 ccsbBroad304_02692 pLX_304 0% 58% 58% V5 0_1ins459 n/a
3 TRCN0000466840 GGAAAGCAACCCCCCTCCGTTCAG pLX_317 33% 58% 58% V5 0_1ins459 n/a
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