Transcript: Human XM_017021285.2

PREDICTED: Homo sapiens kinectin 1 (KTN1), transcript variant X19, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KTN1 (3895)
Length:
4578
CDS:
264..4097

Additional Resources:

NCBI RefSeq record:
XM_017021285.2
NBCI Gene record:
KTN1 (3895)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017021285.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000063521 CGTGATCGTTTAACAAGTAAA pLKO.1 2142 CDS 100% 13.200 18.480 N KTN1 n/a
2 TRCN0000300914 CGTGATCGTTTAACAAGTAAA pLKO_005 2142 CDS 100% 13.200 18.480 N KTN1 n/a
3 TRCN0000063519 CCCTTATTCATGCAACTACTT pLKO.1 940 CDS 100% 4.950 3.960 N KTN1 n/a
4 TRCN0000300981 CCCTTATTCATGCAACTACTT pLKO_005 940 CDS 100% 4.950 3.960 N KTN1 n/a
5 TRCN0000216417 GCCAAATTAAAGCCTTATTTA pLKO.1 4151 3UTR 100% 15.000 10.500 N Ktn1 n/a
6 TRCN0000063520 GCTGTTGAGTTGGAGGCTAAA pLKO.1 3306 CDS 100% 10.800 7.560 N KTN1 n/a
7 TRCN0000300979 GCTGTTGAGTTGGAGGCTAAA pLKO_005 3306 CDS 100% 10.800 7.560 N KTN1 n/a
8 TRCN0000063518 CCTCTCTAGTTGAAGAACTTA pLKO.1 2641 CDS 100% 5.625 3.938 N KTN1 n/a
9 TRCN0000300982 CCTCTCTAGTTGAAGAACTTA pLKO_005 2641 CDS 100% 5.625 3.938 N KTN1 n/a
10 TRCN0000063522 CGGTAAACCAACAGCTCACAA pLKO.1 4045 CDS 100% 4.950 3.465 N KTN1 n/a
11 TRCN0000300921 CGGTAAACCAACAGCTCACAA pLKO_005 4045 CDS 100% 4.950 3.465 N KTN1 n/a
12 TRCN0000165774 CCTCCTAAGTAGCTGGGATTA pLKO.1 210 5UTR 100% 10.800 5.400 Y SNX29P1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017021285.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.