Transcript: Human XM_017023510.1

PREDICTED: Homo sapiens MTOR associated protein, eak-7 homolog (MEAK7), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MEAK7 (57707)
Length:
3648
CDS:
425..1795

Additional Resources:

NCBI RefSeq record:
XM_017023510.1
NBCI Gene record:
MEAK7 (57707)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017023510.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000122635 GCTCGTCTCTTGATCTGACTA pLKO.1 1089 CDS 100% 4.950 6.930 N MEAK7 n/a
2 TRCN0000143721 GCCATAGTAAATCGAGCTGTT pLKO.1 3248 3UTR 100% 4.050 5.670 N MEAK7 n/a
3 TRCN0000121910 CCAAGAAATCTTGTGTCAAAT pLKO.1 2043 3UTR 100% 13.200 9.240 N MEAK7 n/a
4 TRCN0000145224 GATGCTCTGTCATCAGATAAA pLKO.1 509 CDS 100% 13.200 9.240 N MEAK7 n/a
5 TRCN0000140326 CCTCAGGATCTCTCCAAGAAA pLKO.1 2030 3UTR 100% 5.625 3.938 N MEAK7 n/a
6 TRCN0000122239 GCAGAGATTGATCAATTGTTT pLKO.1 488 CDS 100% 5.625 3.938 N MEAK7 n/a
7 TRCN0000140043 GCTCAGGAGAACTTCCAGTTT pLKO.1 1613 CDS 100% 4.950 3.465 N MEAK7 n/a
8 TRCN0000142884 CCAGTTTGATAAGATGGAGGT pLKO.1 1627 CDS 100% 2.160 1.512 N MEAK7 n/a
9 TRCN0000139943 GCAGCACAATTACTTTGGGCT pLKO.1 1513 CDS 100% 0.660 0.462 N MEAK7 n/a
10 TRCN0000140798 GCACCCTAAGTTTGGGAACTT pLKO.1 2742 3UTR 100% 0.495 0.347 N MEAK7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017023510.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08764 pDONR223 100% 99.7% 99.3% None 658A>G;799T>C;1342G>T n/a
2 ccsbBroad304_08764 pLX_304 0% 99.7% 99.3% V5 658A>G;799T>C;1342G>T n/a
3 TRCN0000480876 ACCTTGGAAACCCCCCCGGGTTGC pLX_317 31.1% 99.7% 99.3% V5 658A>G;799T>C;1342G>T n/a
4 ccsbBroadEn_08763 pDONR223 100% 99.6% 99.3% None (many diffs) n/a
5 ccsbBroad304_08763 pLX_304 0% 99.6% 99.3% V5 (many diffs) n/a
6 TRCN0000478611 ACAATTCTGGACCACCTATATATA pLX_317 22.7% 99.6% 99.3% V5 (many diffs) n/a
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