Transcript: Human XM_017025550.2

PREDICTED: Homo sapiens tetratricopeptide repeat domain 39C (TTC39C), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TTC39C (125488)
Length:
2649
CDS:
764..2332

Additional Resources:

NCBI RefSeq record:
XM_017025550.2
NBCI Gene record:
TTC39C (125488)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017025550.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000417280 ACAACGACTAGAGTGTCAAAT pLKO_005 1552 CDS 100% 13.200 18.480 N TTC39C n/a
2 TRCN0000148389 CCAGTGCTATTATGCCTACTT pLKO.1 1738 CDS 100% 4.950 6.930 N TTC39C n/a
3 TRCN0000128943 CCCAGTTAAGCTGACATATTA pLKO.1 2459 3UTR 100% 15.000 10.500 N TTC39C n/a
4 TRCN0000422334 ATTTCTCTGGCTACGACTTTG pLKO_005 2247 CDS 100% 10.800 7.560 N TTC39C n/a
5 TRCN0000127768 GAGGAGGATGATGATGGTAAT pLKO.1 2526 3UTR 100% 10.800 7.560 N TTC39C n/a
6 TRCN0000130297 CGTCTATTGAAGTGTTGTACT pLKO.1 1926 CDS 100% 4.950 3.465 N TTC39C n/a
7 TRCN0000148637 CTTGACTTCTGATGCTGCAAA pLKO.1 1153 CDS 100% 4.950 3.465 N TTC39C n/a
8 TRCN0000147387 GATGAATTGTGTCGTCAGAAT pLKO.1 2120 CDS 100% 4.950 3.465 N TTC39C n/a
9 TRCN0000130810 GCCATGATGACATTTGAGGAA pLKO.1 800 CDS 100% 2.640 1.848 N TTC39C n/a
10 TRCN0000416271 AGTTGGCATGTGATGACTTAA pLKO_005 831 CDS 100% 13.200 7.920 N TTC39C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017025550.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04799 pDONR223 100% 99.9% 100% None 1380C>T n/a
2 ccsbBroad304_04799 pLX_304 0% 99.9% 100% V5 1380C>T n/a
3 TRCN0000470153 TCACATTCGCGATCGCCTGCACAT pLX_317 28.3% 99.9% 100% V5 1380C>T n/a
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