Construct: ORF ccsbBroadEn_04799
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005113.1_s300c1, BRDN0000394819
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTC39C (125488)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 125488 | TTC39C | tetratricopeptide repeat do... | NM_153211.4 | 99.9% | 100% | 1380C>T |
| 2 | human | 125488 | TTC39C | tetratricopeptide repeat do... | XM_005258198.5 | 99.9% | 100% | 1380C>T |
| 3 | human | 125488 | TTC39C | tetratricopeptide repeat do... | XM_017025550.2 | 99.9% | 100% | 1380C>T |
| 4 | human | 125488 | TTC39C | tetratricopeptide repeat do... | NM_001135993.2 | 89.4% | 89.5% | 1_183del;1563C>T |
| 5 | human | 125488 | TTC39C | tetratricopeptide repeat do... | XM_011525814.3 | 83.3% | 83.3% | 1_183del;1077_1078ins108;1455C>T |
| 6 | human | 125488 | TTC39C | tetratricopeptide repeat do... | NM_001292030.2 | 51.9% | 49.6% | (many diffs) |
| 7 | human | 125488 | TTC39C | tetratricopeptide repeat do... | XM_006722392.3 | 45.9% | 45.7% | 1_183del;984_985insTGTC;987_988ins758 |
| 8 | mouse | 72747 | Ttc39c | tetratricopeptide repeat do... | NM_028341.4 | 80.1% | 85% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1635
- ORF length:
- 1566
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTTTTGGA GCCAGCTTTG TCAGTTTTTT GAATGCCATG ATGACATTTG 121 AGGAAGAAAA AATGCAGTTG GCATGTGATG ACTTAAAAAC CACAGAAAAA CTGTGTGAAA 181 GTGAAGAGGC TGGAGTAATT GAAACAATCA AGAATAAAAT TAAGAAGAAC GTTGATGTCC 241 GAAAATCCGC CCCCTCTATG GTTGATCGGC TTCAGAGGCA GATAATCATA GCTGACTGCC 301 AGGTTTACCT GGCTGTGCTT TCATTTGTAA AACAAGAATT GTCAGCTTAT ATCAAAGGTG 361 GGTGGATCCT TAGGAAAGCC TGGAAGATTT ACAATAAATG CTATCTGGAC ATCAATGCCC 421 TTCAGGAGCT GTATCAGAAG AAGCTAACTG AAGAGTCCTT GACTTCTGAT GCTGCAAATG 481 ATAATCACAT TGTGGCTGAA GGGGTGTCTG AGGAGTCTCT GAACAGACTG AAAGGTGCTG 541 TTAGCTTTGG ATATGGCCTT TTTCACCTTT GCATATCCAT GGTGCCCCCA AACCTGCTCA 601 AAATCATCAA CCTGCTGGGT TTTCCTGGAG ACCGCCTACA GGGGCTTTCT TCACTGATGT 661 ATGCAAGCGA AAGTAAGGAC ATGAAGGCCC CTTTAGCTAC ATTAGCTCTG CTCTGGTATC 721 ATACTGTAGT CCGCCCGTTT TTTGCCTTGG ATGGCAGTGA TAACAAGGCA GGCCTGGATG 781 AAGCTAAGGA AATTCTCCTT AAAAAAGAAG CTGCTTATCC AAATTCTTCC CTCTTTATGT 841 TTTTCAAGGG ACGGATACAA CGACTAGAGT GTCAAATCAA CAGTGCCTTG ACATCTTTCC 901 ACACTGCTTT GGAACTTGCA GTAGACCAGA GAGAAATTCA ACATGTCTGT CTGTATGAAA 961 TTGGTTGGTG CAGCATGATA GAGCTCAATT TCAAGGATGC ATTTGATTCC TTTGAGAGGC 1021 TAAAAAATGA GTCCAGGTGG TCCCAGTGCT ATTATGCCTA CTTGACTGCA GTTTGTCAGG 1081 GAGCCACTGG TGATGTGGAT GGGGCACAGA TTGTCTTTAA AGAAGTTCAG AAACTCTTCA 1141 AAAGGAAAAA CAATCAGATT GAACAGTTCT CGGTGAAAAA GGCAGAGCGA TTTCGGAAGC 1201 AAACCCCAAC CAAAGCGCTC TGTGTGTTGG CGTCTATTGA AGTGTTGTAC TTGTGGAAAG 1261 CTCTTCCAAA CTGTTCCTTC CCCAACCTGC AGAGGATGAG TCAAGCTTGC CATGAAGTGG 1321 ATGACTCATC TGTTGTTGGA TTAAAGTATT TGCTTCTTGG TGCCATACAC AAATGTCTAG 1381 GAAACTCAGA AGATGCTGTT CAGTACTTCC AGCGAGCTGT TAAAGATGAA TTGTGTCGTC 1441 AGAATAATTT ATATGTTCAG CCGTATGCCT GTTATGAACT TGGCTGTCTT CTATTAGACA 1501 AACCAGAGAC TGTAGGAAGA GGCAGAGCTC TACTTCTTCA AGCAAAGGAG GATTTCTCTG 1561 GCTACGACTT TGAAAACAGA TTGCATGTCC GCATCCATGC TGCTCTGGCC TCTCTGAGGG 1621 AATTGGTTCC TCAGTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1681 tatcaatttg ttgcaacgaa c