Construct: ORF ccsbBroad304_05006
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013170.1_s304c1, BRDN0000411803
- Derived from:
- ccsbBroadEn_05006
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF583 (147949)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_05006
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 147949 | ZNF583 | zinc finger protein 583 | NM_001159860.1 | 100% | 100% | |
| 2 | human | 147949 | ZNF583 | zinc finger protein 583 | NM_001159861.2 | 100% | 100% | |
| 3 | human | 147949 | ZNF583 | zinc finger protein 583 | NM_152478.3 | 100% | 100% | |
| 4 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_011526517.2 | 100% | 100% | |
| 5 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_017026350.1 | 100% | 100% | |
| 6 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_024451383.1 | 100% | 100% | |
| 7 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_017026346.2 | 99.8% | 99.8% | 136_138delGCA |
| 8 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_017026347.2 | 99.8% | 99.8% | 136_138delGCA |
| 9 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_017026348.1 | 99.8% | 99.8% | 136_138delGCA |
| 10 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_017026349.1 | 99.8% | 99.8% | 136_138delGCA |
| 11 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_005258558.1 | 99.7% | 99.6% | 4_5insC;7_10delTTTC |
| 12 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_017026351.2 | 90.7% | 87% | (many diffs) |
| 13 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_017026352.2 | 90.7% | 87% | (many diffs) |
| 14 | human | 147949 | ZNF583 | zinc finger protein 583 | XM_017026353.1 | 90.7% | 87% | (many diffs) |
| 15 | mouse | 213011 | Zfp583 | zinc finger protein 583 | NM_001033249.3 | 85.1% | 82.6% | (many diffs) |
| 16 | mouse | 213011 | Zfp583 | zinc finger protein 583 | XM_011250475.2 | 85.1% | 82.6% | (many diffs) |
| 17 | mouse | 213011 | Zfp583 | zinc finger protein 583 | XM_011250473.2 | 85% | 82.4% | (many diffs) |
| 18 | mouse | 213011 | Zfp583 | zinc finger protein 583 | XM_011250474.2 | 85% | 82.4% | (many diffs) |
| 19 | mouse | 213011 | Zfp583 | zinc finger protein 583 | XM_011250471.2 | 80.2% | 77.7% | (many diffs) |
| 20 | mouse | 213011 | Zfp583 | zinc finger protein 583 | XM_011250472.2 | 80.2% | 77.7% | (many diffs) |
| 21 | mouse | 213011 | Zfp583 | zinc finger protein 583 | XM_011250468.2 | 80% | 77.5% | (many diffs) |
| 22 | mouse | 213011 | Zfp583 | zinc finger protein 583 | XM_011250469.2 | 80% | 77.5% | (many diffs) |
| 23 | mouse | 213011 | Zfp583 | zinc finger protein 583 | XM_011250470.2 | 80% | 77.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1776
- ORF length:
- 1707
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gtccaaggat ttggtgacat ttggggatgt ggctgtaaat ttctctcaag 121 aggaatggga atggctgaac cctgctcaga ggaatttgta caggaaagtg atgttggaga 181 actacaggag cttggtatca ttgggagttt ctgtttctaa gccagatgtg atctcattat 241 tggagcaagg aaaagagccc tggatggtga agaaggaggg aacaagaggc ccatgccctg 301 attgggagta tgtatttaaa aacagtgaat tttcatcaaa gcaagagaca tatgaagaat 361 catccaaagt tgtgacagtg ggagcaagac atcttagtta tagccttgac tatcccagtt 421 tgagagaaga ctgtcaaagt gaggactggt ataagaacca gctgggaagt caagaggtac 481 atcttagtca attaatcatc actcataaag aaatccttcc agaagttcaa aataaagaat 541 ataacaaatc ttggcaaaca ttccaccagg atacaatctt tgatatacaa cagagttttc 601 ccaccaaaga aaaagcacat aagcatgaac cacaaaagaa aagttaccga aaaaaatctg 661 ttgaaatgaa acataggaaa gtctatgtag aaaagaaact tttgaaatgt aatgattgtg 721 agaaagtctt caaccagagc tcatccctta ctcttcatca gagaattcat actggagaga 781 aaccctatgc atgtgttgaa tgtgggaaaa cgttcagcca gagtgcaaac ttggcgcaac 841 ataagagaat acatactgga gagaaaccct atgaatgtaa agaatgtagg aaagccttca 901 gccagaatgc acacctggcc caacatcaga gagttcatac tggagagaaa ccttatcagt 961 gtaaagaatg taaaaaagcc ttcagccaga ttgcacacct gactcagcat cagagagttc 1021 atactggaga gagacctttc gaatgtattg aatgtggaaa ggcctttagt aatggttcat 1081 ttcttgctca gcatcagaga attcatacag gagagaaacc ttatgtgtgt aatgtgtgtg 1141 ggaaagcctt tagccatcgt ggatacctaa ttgtacatca gagaattcat actggagaga 1201 gaccctacga atgtaaggaa tgtaggaaag ccttcagcca gtatgcacac cttgctcaac 1261 atcagagagt tcatactgga gaaaaacctt atgaatgtaa agtatgtagg aaagccttca 1321 gccaaattgc ataccttgat caacatcaga gggttcatac tggagagaaa ccctatgaat 1381 gtattgaatg tgggaaggcc tttagcaata gttcatcact tgcacaacat cagagaagtc 1441 atactggaga aaaaccctat atgtgtaagg aatgtaggaa aacatttagc cagaatgcag 1501 gccttgctca acatcagaga attcatactg gagagaaacc ttatgaatgt aatgtttgtg 1561 ggaaagcatt tagctatagt ggatctctta ctctacatca gagaattcat actggagaaa 1621 gaccctatga atgtaaagat tgcaggaaat ctttcaggca gcgtgcacat cttgctcatc 1681 atgagagaat tcatactatg gagtcattct tgactctttc ctctccctca ccctccacat 1741 caaatcagtt gccaagacct gtaggtttca tctccttgcc aactttcttg tacaaagtgg 1801 ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg 1861 ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta