Transcript: Human XM_017026820.1

PREDICTED: Homo sapiens kallikrein related peptidase 14 (KLK14), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KLK14 (43847)
Length:
1178
CDS:
547..1086

Additional Resources:

NCBI RefSeq record:
XM_017026820.1
NBCI Gene record:
KLK14 (43847)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026820.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000051528 GCAATGCGTGAACATCAACAT pLKO.1 1076 CDS 100% 4.950 6.930 N KLK14 n/a
2 TRCN0000051530 CTCTCTGCAATGCGTGAACAT pLKO.1 1070 CDS 100% 4.950 3.960 N KLK14 n/a
3 TRCN0000051529 GCCAAGAGGATGAGAACAAGA pLKO.1 647 CDS 100% 4.950 3.465 N KLK14 n/a
4 TRCN0000372745 GCCAGAAGGCCTATCCTAGAA pLKO_005 1114 3UTR 100% 4.950 3.465 N KLK14 n/a
5 TRCN0000378886 TTTCAGGCCAGTGGGTCATCA pLKO_005 764 CDS 100% 4.950 3.465 N KLK14 n/a
6 TRCN0000051532 CCTGGCTATAGCCATGACACA pLKO.1 624 CDS 100% 2.640 1.848 N KLK14 n/a
7 TRCN0000372701 TTCCTCCTGCTGACAGCACTT pLKO_005 598 CDS 100% 4.050 2.430 N KLK14 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026820.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03139 pDONR223 100% 67% 64.4% None 513_514insGCCA;537_538ins260 n/a
2 ccsbBroad304_03139 pLX_304 0% 67% 64.4% V5 513_514insGCCA;537_538ins260 n/a
3 TRCN0000476981 CAGATTCGAGGCCTCGGCGCCATA pLX_317 44.9% 67% 64.4% V5 513_514insGCCA;537_538ins260 n/a
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