Transcript: Human XM_017027032.1

PREDICTED: Homo sapiens zinc finger protein 471 (ZNF471), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF471 (57573)
Length:
8978
CDS:
3056..4714

Additional Resources:

NCBI RefSeq record:
XM_017027032.1
NBCI Gene record:
ZNF471 (57573)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017027032.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000412576 TTCGTCACTGGAGGAGTTATC pLKO_005 3918 CDS 100% 10.800 7.560 N ZNF471 n/a
2 TRCN0000015476 GAAAGCCTTCAGTGTTCACAT pLKO.1 3976 CDS 100% 4.950 3.465 N ZNF471 n/a
3 TRCN0000015473 GCCCATTCTCAGATTGGGAAT pLKO.1 3078 CDS 100% 4.050 2.835 N ZNF471 n/a
4 TRCN0000015474 CCAATCTTACTCAACATCAAA pLKO.1 4500 CDS 100% 5.625 3.375 N ZNF471 n/a
5 TRCN0000015477 GAAGGCGTTCAGAAGAAAGTT pLKO.1 4648 CDS 100% 5.625 3.375 N ZNF471 n/a
6 TRCN0000218427 ACTGGAGAGAAACCCTATAAA pLKO_005 4529 CDS 100% 15.000 7.500 Y ZNF443 n/a
7 TRCN0000374174 ACTGGAGAGAAACCCTATAAA pLKO_005 4529 CDS 100% 15.000 7.500 Y Zfp97 n/a
8 TRCN0000086300 CAGGAGAGAAACCTTACAAAT pLKO.1 4026 CDS 100% 13.200 6.600 Y Znf41-ps n/a
9 TRCN0000235353 CAGGAGAGAAACCTTACAAAT pLKO_005 4026 CDS 100% 13.200 6.600 Y EG666605 n/a
10 TRCN0000239754 GAGAAACCTTATGAGTGTAAT pLKO_005 4451 CDS 100% 13.200 6.600 Y Gm11677 n/a
11 TRCN0000015520 CTGGAGAGAAGCCTTATGAAT pLKO.1 4362 CDS 100% 5.625 2.813 Y ZNF625 n/a
12 TRCN0000149265 GAGTGTAATGAATGCGGGAAA pLKO.1 4463 CDS 100% 4.050 2.025 Y ZNF658B n/a
13 TRCN0000127836 GCATGTTCTAACCCAATGCAA pLKO.1 6306 3UTR 100% 3.000 1.500 Y LINC01949 n/a
14 TRCN0000284687 TACAGGAGAGAAACCTTATAA pLKO_005 4108 CDS 100% 15.000 7.500 Y Zfp984 n/a
15 TRCN0000243782 TGGAGAGAAACCCTATGAATA pLKO_005 3772 CDS 100% 13.200 6.600 Y Zfp977 n/a
16 TRCN0000158848 GAGAAACCTTACAAATGTGAT pLKO.1 4031 CDS 100% 4.950 2.475 Y ZNF28 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017027032.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.