Transcript: Human XM_017028014.2

PREDICTED: Homo sapiens PDX1 C-terminal inhibiting factor 1 (PCIF1), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PCIF1 (63935)
Length:
2502
CDS:
1164..2234

Additional Resources:

NCBI RefSeq record:
XM_017028014.2
NBCI Gene record:
PCIF1 (63935)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017028014.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157332 CGATGTGATTTCGGACCCTTT pLKO.1 532 5UTR 100% 4.050 5.670 N PCIF1 n/a
2 TRCN0000156935 GTCCCTACTACTTCAACCGAT pLKO.1 468 5UTR 100% 2.640 3.696 N PCIF1 n/a
3 TRCN0000276251 ACGACATTCCTATCAGGTTAT pLKO_005 1098 5UTR 100% 10.800 7.560 N PCIF1 n/a
4 TRCN0000158063 CATCCAGACCAATGCTGTCAT pLKO.1 829 5UTR 100% 4.950 3.465 N PCIF1 n/a
5 TRCN0000285500 CATCCAGACCAATGCTGTCAT pLKO_005 829 5UTR 100% 4.950 3.465 N PCIF1 n/a
6 TRCN0000156618 GATGCCATGGTCTCTCACTTT pLKO.1 1803 CDS 100% 4.950 3.465 N PCIF1 n/a
7 TRCN0000156865 GCAAGGTGGTAGACAAAGGAT pLKO.1 1011 5UTR 100% 3.000 2.100 N PCIF1 n/a
8 TRCN0000285499 GCAAGGTGGTAGACAAAGGAT pLKO_005 1011 5UTR 100% 3.000 2.100 N PCIF1 n/a
9 TRCN0000276216 ATATGAAGATTATGGTTCTGC pLKO_005 2330 3UTR 100% 2.640 1.848 N PCIF1 n/a
10 TRCN0000154448 GTGGTCAAATGGAATGTGGAA pLKO.1 1223 CDS 100% 2.640 1.848 N PCIF1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017028014.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.