Transcript: Human XM_017028748.1

PREDICTED: Homo sapiens Sad1 and UNC84 domain containing 2 (SUN2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SUN2 (25777)
Length:
3766
CDS:
290..2341

Additional Resources:

NCBI RefSeq record:
XM_017028748.1
NBCI Gene record:
SUN2 (25777)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017028748.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000141514 CGAGCCTATTCAGACGTTTCA pLKO.1 2302 CDS 100% 4.950 6.930 N SUN2 n/a
2 TRCN0000143336 GAGGAAATCCAGCAACATGAA pLKO.1 421 CDS 100% 4.950 3.465 N SUN2 n/a
3 TRCN0000143335 GCCTATTCAGACGTTTCACTT pLKO.1 2305 CDS 100% 4.950 3.465 N SUN2 n/a
4 TRCN0000141958 GCAAGACTCAGAAGACCTCTT pLKO.1 1390 CDS 100% 4.050 2.835 N SUN2 n/a
5 TRCN0000141742 GAAGTCAGAGTGGCAAAGCAT pLKO.1 1462 CDS 100% 3.000 2.100 N SUN2 n/a
6 TRCN0000142851 CTGCAGAAAGAAGGTGTGATT pLKO.1 1832 CDS 100% 4.950 2.970 N SUN2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017028748.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02851 pDONR223 100% 95.1% 94.8% None (many diffs) n/a
2 ccsbBroad304_02851 pLX_304 0% 95.1% 94.8% V5 (many diffs) n/a
3 TRCN0000478421 GAGAAACCTTTGGCACTATACGTC pLX_317 14.9% 95.1% 94.8% V5 (many diffs) n/a
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