Transcript: Human XM_017029378.2

PREDICTED: Homo sapiens Cdc42 guanine nucleotide exchange factor 9 (ARHGEF9), transcript variant X15, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ARHGEF9 (23229)
Length:
3982
CDS:
402..1490

Additional Resources:

NCBI RefSeq record:
XM_017029378.2
NBCI Gene record:
ARHGEF9 (23229)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017029378.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047616 CGAGCAACTGAAGGTAATCTT pLKO.1 848 CDS 100% 5.625 4.500 N ARHGEF9 n/a
2 TRCN0000226310 CAACCGGGAGTTGGCATTTAA pLKO_005 491 CDS 100% 15.000 10.500 N Arhgef9 n/a
3 TRCN0000047613 CGCATTGACATGGATAAATAT pLKO.1 3842 3UTR 100% 15.000 10.500 N ARHGEF9 n/a
4 TRCN0000218589 CAAGATGGATTCTGGATATAC pLKO_005 984 CDS 100% 13.200 9.240 N Arhgef9 n/a
5 TRCN0000047614 CCAAGATGGATTCTGGATATA pLKO.1 983 CDS 100% 13.200 9.240 N ARHGEF9 n/a
6 TRCN0000047617 GAGGAGATACATCTGTTCTTT pLKO.1 3947 3UTR 100% 5.625 3.938 N ARHGEF9 n/a
7 TRCN0000258242 ATGTGACTCAGCAGATCAATG pLKO_005 1258 CDS 100% 10.800 7.560 N Arhgef9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017029378.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02740 pDONR223 100% 67.6% 66.7% None (many diffs) n/a
2 ccsbBroad304_02740 pLX_304 0% 67.6% 66.7% V5 (many diffs) n/a
3 TRCN0000471927 GCGTGCTCCTGAGGTACAGTGCCC pLX_317 31.3% 67.6% 66.7% V5 (many diffs) n/a
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