Transcript: Human XM_017030236.2

PREDICTED: Homo sapiens liver carboxylesterase 1-like (LOC107987423), mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC107987423 (107987423)
Length:
1261
CDS:
203..1063

Additional Resources:

NCBI RefSeq record:
XM_017030236.2
NBCI Gene record:
LOC107987423 (107987423)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017030236.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000371769 ATGAGCTCTTCTCCGTCTTTG pLKO_005 768 CDS 100% 10.800 5.400 Y CES1 n/a
2 TRCN0000371770 GAGCTCTTGGAGACGACATTG pLKO_005 236 CDS 100% 10.800 5.400 Y CES1 n/a
3 TRCN0000371771 TGAAACCCAAGACGGTGATAG pLKO_005 735 CDS 100% 10.800 5.400 Y CES1 n/a
4 TRCN0000046935 TGCATTGCTAAGGAACTGATT pLKO.1 527 CDS 100% 4.950 2.475 Y CES1 n/a
5 TRCN0000046933 CGGAATTAACAAGCAGGAGTT pLKO.1 403 CDS 100% 4.050 2.025 Y CES1 n/a
6 TRCN0000046934 GAAATTCTTATCTCTGGACTT pLKO.1 262 CDS 100% 4.050 2.025 Y CES1 n/a
7 TRCN0000046937 CCAGACAGAACACATAGAGCT pLKO.1 1039 CDS 100% 2.640 1.320 Y CES1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017030236.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13829 pDONR223 100% 50.2% 50.2% None 0_1ins843;240_242delGCA n/a
2 ccsbBroad304_13829 pLX_304 0% 50.2% 50.2% V5 0_1ins843;240_242delGCA n/a
3 TRCN0000476888 TTTCTTTGTTTGGAAACAGATCTG pLX_317 17.2% 50.2% 50.2% V5 0_1ins843;240_242delGCA n/a
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