Transcript: Mouse XM_017313020.1

PREDICTED: Mus musculus Rho GTPase activating protein 10 (Arhgap10), transcript variant X10, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Arhgap10 (78514)
Length:
3553
CDS:
1107..3083

Additional Resources:

NCBI RefSeq record:
XM_017313020.1
NBCI Gene record:
Arhgap10 (78514)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017313020.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000094796 CCGAGTTAATGCCATCCACTT pLKO.1 2192 CDS 100% 4.050 5.670 N Arhgap10 n/a
2 TRCN0000335117 CCGAGTTAATGCCATCCACTT pLKO_005 2192 CDS 100% 4.050 5.670 N Arhgap10 n/a
3 TRCN0000094795 GCCATCATGGATTTGAAGTTT pLKO.1 2376 CDS 100% 5.625 3.938 N Arhgap10 n/a
4 TRCN0000335195 GCCATCATGGATTTGAAGTTT pLKO_005 2376 CDS 100% 5.625 3.938 N Arhgap10 n/a
5 TRCN0000094797 GCCGTGTACAACCTTTGTCTT pLKO.1 2556 CDS 100% 4.950 3.465 N Arhgap10 n/a
6 TRCN0000335196 GCCGTGTACAACCTTTGTCTT pLKO_005 2556 CDS 100% 4.950 3.465 N Arhgap10 n/a
7 TRCN0000094798 AGAAAGAAAGAAGTTCGAGTT pLKO.1 1364 CDS 100% 4.050 2.835 N Arhgap10 n/a
8 TRCN0000335194 AGAAAGAAAGAAGTTCGAGTT pLKO_005 1364 CDS 100% 4.050 2.835 N Arhgap10 n/a
9 TRCN0000094794 GCTGTCCTTCTTTCAGGGAAT pLKO.1 1397 CDS 100% 4.050 2.835 N Arhgap10 n/a
10 TRCN0000048475 GCCTCTCATGACCTATGAGTT pLKO.1 2126 CDS 100% 0.495 0.347 N ARHGAP10 n/a
11 TRCN0000430704 CAGAACACAGCTCGGAATTAT pLKO_005 2944 CDS 100% 15.000 10.500 N ARHGAP10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017313020.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.