Transcript: Mouse XM_017318159.1

PREDICTED: Mus musculus HECT domain containing 2 (Hectd2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Hectd2 (226098)
Length:
5112
CDS:
1387..2964

Additional Resources:

NCBI RefSeq record:
XM_017318159.1
NBCI Gene record:
Hectd2 (226098)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017318159.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000412949 GTCAGTACCCATTCGTTATTT pLKO_005 1739 CDS 100% 15.000 21.000 N Hectd2 n/a
2 TRCN0000092109 GCGACTCACTTGATGAGTTAA pLKO.1 1916 CDS 100% 1.320 1.848 N Hectd2 n/a
3 TRCN0000428292 GGAGTAATTAAATCCTATAAC pLKO_005 2407 CDS 100% 13.200 10.560 N Hectd2 n/a
4 TRCN0000092108 CCAGCATTTAGTACCAGCTTA pLKO.1 4277 3UTR 100% 4.950 3.465 N Hectd2 n/a
5 TRCN0000092110 CCCTCGTTCCTTACACTGATT pLKO.1 1628 CDS 100% 4.950 3.465 N Hectd2 n/a
6 TRCN0000429680 TATAGTGAAGGCATGATTTAA pLKO_005 3121 3UTR 100% 15.000 9.000 N Hectd2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017318159.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000491311 AGACCCACCAAAACAATGAAACTA pLX_317 9.4% 61% 60.9% V5 (not translated due to prior stop codon) (many diffs) n/a
2 TRCN0000488652 GGGGAAACATCGGCAACATGCCAC pLX_317 14.4% 60.9% 60.8% V5 (many diffs) n/a
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