Transcript: Mouse XM_017318245.1

PREDICTED: Mus musculus zinc finger protein 950 (Zfp950), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zfp950 (414758)
Length:
5288
CDS:
258..1955

Additional Resources:

NCBI RefSeq record:
XM_017318245.1
NBCI Gene record:
Zfp950 (414758)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017318245.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235219 ACAGGAGAGAAACCCTATAAA pLKO_005 1425 CDS 100% 15.000 7.500 Y LOC66376 n/a
2 TRCN0000235327 ACAGGAGAGAAACCCTATAAA pLKO_005 1425 CDS 100% 15.000 7.500 Y OTTMUSG00000016228 n/a
3 TRCN0000239543 ACAGGAGAGAAACCTTATAAA pLKO_005 1761 CDS 100% 15.000 7.500 Y Gm13212 n/a
4 TRCN0000243738 CAGGAGAGAAACCCTATAAAT pLKO_005 1426 CDS 100% 15.000 7.500 Y Gm14430 n/a
5 TRCN0000284687 TACAGGAGAGAAACCTTATAA pLKO_005 1760 CDS 100% 15.000 7.500 Y Zfp984 n/a
6 TRCN0000239754 GAGAAACCTTATGAGTGTAAT pLKO_005 591 CDS 100% 13.200 6.600 Y Gm11677 n/a
7 TRCN0000262238 TACAGGAGAGAAACCCTATAA pLKO_005 1424 CDS 100% 13.200 6.600 Y Gm14305 n/a
8 TRCN0000239829 AGGAGAGAAACCCTATGAATG pLKO_005 503 CDS 100% 10.800 5.400 Y Gm14393 n/a
9 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 1423 CDS 100% 10.800 5.400 Y Gm14308 n/a
10 TRCN0000243739 GAATGTAAACAATGTGGTAAA pLKO_005 2185 3UTR 100% 10.800 5.400 Y Gm14411 n/a
11 TRCN0000016730 CTGGAGAGAAACCTTATGAAT pLKO.1 922 CDS 100% 5.625 2.813 Y ZNF345 n/a
12 TRCN0000243782 TGGAGAGAAACCCTATGAATA pLKO_005 1343 CDS 100% 13.200 6.600 Y Zfp977 n/a
13 TRCN0000284677 ACAATGTGGTAAAGCCTTTAC pLKO_005 2193 3UTR 100% 10.800 5.400 Y Gm14410 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017318245.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.