Transcript: Mouse XM_017319076.1

PREDICTED: Mus musculus crumbs family member 1, photoreceptor morphogenesis associated (Crb1), transcript variant X9, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Crb1 (170788)
Length:
4152
CDS:
665..3289

Additional Resources:

NCBI RefSeq record:
XM_017319076.1
NBCI Gene record:
Crb1 (170788)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017319076.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000435778 TGGAGTCACTGAGTAGTTATG pLKO_005 3410 3UTR 100% 10.800 15.120 N Crb1 n/a
2 TRCN0000419242 ATAGAGATTGGAGGCATATAT pLKO_005 2366 CDS 100% 15.000 12.000 N Crb1 n/a
3 TRCN0000099832 GCATTCAAGATGCCAGATTAT pLKO.1 2073 CDS 100% 13.200 10.560 N Crb1 n/a
4 TRCN0000425169 GATGGAAATGTTCACTTAATA pLKO_005 1436 CDS 100% 15.000 10.500 N Crb1 n/a
5 TRCN0000438838 TGAATGTGACAGGCCCTATAC pLKO_005 1156 CDS 100% 10.800 7.560 N Crb1 n/a
6 TRCN0000099834 CGGCCTTTAGTGTTAATGATA pLKO.1 1242 CDS 100% 5.625 3.938 N Crb1 n/a
7 TRCN0000099831 CCCAAGTTCATGGTAAACTTT pLKO.1 1406 CDS 100% 0.563 0.394 N Crb1 n/a
8 TRCN0000099833 CCAGTGTCTGAACAATGGAAA pLKO.1 412 5UTR 100% 4.950 2.970 N Crb1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017319076.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.