Transcript: Mouse XM_017319240.1

PREDICTED: Mus musculus uridine-cytidine kinase 1-like 1 (Uckl1), transcript variant X10, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Uckl1 (68556)
Length:
2174
CDS:
1032..2015

Additional Resources:

NCBI RefSeq record:
XM_017319240.1
NBCI Gene record:
Uckl1 (68556)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017319240.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000024875 GATCGCTACTTTGGGACAGAT pLKO.1 1947 CDS 100% 4.950 6.930 N Uckl1 n/a
2 TRCN0000037576 GCAGTACAACAAGTTTGTCAA pLKO.1 1130 CDS 100% 4.950 6.930 N UCKL1 n/a
3 TRCN0000322261 TCCTGGACATGAAGATCTTTG pLKO_005 1024 5UTR 100% 10.800 7.560 N Uckl1 n/a
4 TRCN0000024874 GCCTGTAACAATTTCAACTTT pLKO.1 757 5UTR 100% 5.625 3.938 N Uckl1 n/a
5 TRCN0000322258 GCCTGTAACAATTTCAACTTT pLKO_005 757 5UTR 100% 5.625 3.938 N Uckl1 n/a
6 TRCN0000024877 CAGTACAACAAGTTTGTCAAA pLKO.1 1131 CDS 100% 4.950 3.465 N Uckl1 n/a
7 TRCN0000322195 CAGTACAACAAGTTTGTCAAA pLKO_005 1131 CDS 100% 4.950 3.465 N Uckl1 n/a
8 TRCN0000024876 CGGGACATTGAGGGTGTCATT pLKO.1 1107 CDS 100% 4.950 3.465 N Uckl1 n/a
9 TRCN0000322259 CGGGACATTGAGGGTGTCATT pLKO_005 1107 CDS 100% 4.950 3.465 N Uckl1 n/a
10 TRCN0000024878 GCCTTTGCTATTGGCTTAGGA pLKO.1 607 5UTR 100% 3.000 2.100 N Uckl1 n/a
11 TRCN0000322257 GCCTTTGCTATTGGCTTAGGA pLKO_005 607 5UTR 100% 3.000 2.100 N Uckl1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017319240.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489164 TCTGGCGGTCCCACGAATTCTCCA pLX_317 18.4% 51.4% 57.9% V5 (not translated due to prior stop codon) (many diffs) n/a
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