Transcript: Mouse XM_017319409.1

PREDICTED: Mus musculus zinc finger protein 968 (Zfp968), mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zfp968 (100043914)
Length:
3470
CDS:
462..1919

Additional Resources:

NCBI RefSeq record:
XM_017319409.1
NBCI Gene record:
Zfp968 (100043914)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017319409.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235198 GAGCAACACTCTGAGTTTATT pLKO_005 732 CDS 100% 15.000 7.500 Y n/a
2 TRCN0000235202 GCAGTACTCTCCAGATATATA pLKO_005 2121 3UTR 100% 15.000 7.500 Y n/a
3 TRCN0000240262 AGCAACACTCTGAGTTTATTC pLKO_005 733 CDS 100% 13.200 6.600 Y Zfp966 n/a
4 TRCN0000218805 AGTGTCCTCCAAAGACTTAAA pLKO_005 864 CDS 100% 13.200 6.600 Y Zfp970 n/a
5 TRCN0000240261 TACGAAGGCATCTAATGTTAT pLKO_005 2413 3UTR 100% 13.200 6.600 Y Zfp966 n/a
6 TRCN0000284677 ACAATGTGGTAAAGCCTTTAC pLKO_005 1172 CDS 100% 10.800 5.400 Y Gm14410 n/a
7 TRCN0000242348 ACATACAATTGAAGACCATTT pLKO_005 665 CDS 100% 10.800 5.400 Y Gm14393 n/a
8 TRCN0000239829 AGGAGAGAAACCCTATGAATG pLKO_005 1064 CDS 100% 10.800 5.400 Y Gm14393 n/a
9 TRCN0000235200 AGTCATCTCGGAATCCATAAG pLKO_005 1116 CDS 100% 10.800 5.400 Y n/a
10 TRCN0000243733 ATAGGAATCTCACAGCTATAG pLKO_005 628 CDS 100% 10.800 5.400 Y Gm14322 n/a
11 TRCN0000235201 CAATGCATTGCTCTCCGAATA pLKO_005 1698 CDS 100% 10.800 5.400 Y n/a
12 TRCN0000242352 CAGTACTCTCCAAATCCATAA pLKO_005 947 CDS 100% 10.800 5.400 Y Gm14391 n/a
13 TRCN0000226045 CAGTCATCTCGGAATCCATAA pLKO_005 1115 CDS 100% 10.800 5.400 Y Zfp970 n/a
14 TRCN0000239453 CATACAATTGAAGACCATTTC pLKO_005 666 CDS 100% 10.800 5.400 Y Gm14288 n/a
15 TRCN0000239455 CTCAGAAGAGTCTCTACAAAG pLKO_005 589 CDS 100% 10.800 5.400 Y Gm14288 n/a
16 TRCN0000235199 CTCCAAATACATAAACGAATA pLKO_005 1038 CDS 100% 10.800 5.400 Y n/a
17 TRCN0000243739 GAATGTAAACAATGTGGTAAA pLKO_005 1164 CDS 100% 10.800 5.400 Y Gm14411 n/a
18 TRCN0000242409 GAATGTAACCAATGTGGTAAA pLKO_005 1668 CDS 100% 10.800 5.400 Y Gm14418 n/a
19 TRCN0000240260 TCCAAATACATAAACGAATAC pLKO_005 1039 CDS 100% 10.800 5.400 Y Zfp966 n/a
20 TRCN0000240258 TCGTAGTCAAAGGCATGTAAG pLKO_005 782 CDS 100% 10.800 5.400 Y Zfp966 n/a
21 TRCN0000239454 TGTGATGGTAGAGACCTATAG pLKO_005 611 CDS 100% 10.800 5.400 Y Gm14288 n/a
22 TRCN0000243741 ACTCAGGAAGAGTGGGCTTTG pLKO_005 558 CDS 100% 6.000 3.000 Y Gm14411 n/a
23 TRCN0000190377 CGAACACATACAGGAGAGAAA pLKO.1 1137 CDS 100% 4.950 2.475 Y Gm14296 n/a
24 TRCN0000242406 GAGTCTCTACAAAGGTGTGAT pLKO_005 596 CDS 100% 4.950 2.475 Y Gm14418 n/a
25 TRCN0000202246 GCGAACACATACAGGAGAGAA pLKO.1 1136 CDS 100% 4.950 2.475 Y Gm14296 n/a
26 TRCN0000243742 CACCTATGATGACGTGCATGT pLKO_005 530 CDS 100% 4.050 2.025 Y Gm14411 n/a
27 TRCN0000095226 CATGTGAACTTCACTCAGGAA pLKO.1 546 CDS 100% 2.640 1.320 Y Zfp950 n/a
28 TRCN0000218926 AGAAGTGGTGACCTTCTAATA pLKO_005 1950 3UTR 100% 1.320 0.660 Y Zfp970 n/a
29 TRCN0000262238 TACAGGAGAGAAACCCTATAA pLKO_005 1061 CDS 100% 13.200 6.600 Y Gm14305 n/a
30 TRCN0000243782 TGGAGAGAAACCCTATGAATA pLKO_005 1400 CDS 100% 13.200 6.600 Y Zfp977 n/a
31 TRCN0000262239 AGTACTCTCCAAATCCATAAC pLKO_005 948 CDS 100% 10.800 5.400 Y Gm14305 n/a
32 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 1060 CDS 100% 10.800 5.400 Y Gm14308 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017319409.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.