Transcript: Human XM_024447185.1

PREDICTED: Homo sapiens elongator acetyltransferase complex subunit 3 (ELP3), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ELP3 (55140)
Length:
2105
CDS:
235..1644

Additional Resources:

NCBI RefSeq record:
XM_024447185.1
NBCI Gene record:
ELP3 (55140)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024447185.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235509 ACCGAGTACAGAGGGATATTC pLKO_005 1106 CDS 100% 13.200 18.480 N ELP3 n/a
2 TRCN0000235508 TTACTGCATGAAGCGACATTT pLKO_005 693 CDS 100% 13.200 18.480 N ELP3 n/a
3 TRCN0000235507 TTACGAGGCAGTCAAGTATTC pLKO_005 621 CDS 100% 10.800 15.120 N ELP3 n/a
4 TRCN0000001281 CGATTACGCAAGTGTTCAGAA pLKO.1 1372 CDS 100% 4.950 3.960 N ELP3 n/a
5 TRCN0000235510 CACCATAACTCATGCAATAAA pLKO_005 2061 3UTR 100% 15.000 10.500 N ELP3 n/a
6 TRCN0000235511 GTGATGGGTGGAACGTTTATG pLKO_005 523 CDS 100% 13.200 9.240 N ELP3 n/a
7 TRCN0000001280 CGTGGGACTAGAAAGAGACAT pLKO.1 891 CDS 100% 4.950 3.465 N ELP3 n/a
8 TRCN0000001279 CCTACAGACAAGACACCGAAT pLKO.1 453 CDS 100% 4.050 2.835 N ELP3 n/a
9 TRCN0000001278 GCCAGATATGACCCTTTCCTA pLKO.1 436 CDS 100% 3.000 2.100 N ELP3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024447185.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.