Transcript: Human XM_024449126.1

PREDICTED: Homo sapiens splicing factor SWAP (SFSWAP), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SFSWAP (6433)
Length:
3124
CDS:
472..2874

Additional Resources:

NCBI RefSeq record:
XM_024449126.1
NBCI Gene record:
SFSWAP (6433)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024449126.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000275351 CACTTACGGTAGCGACTATTA pLKO_005 546 CDS 100% 13.200 18.480 N SFSWAP n/a
2 TRCN0000275300 TCGTGCCAAGAATGATCAAAG pLKO_005 1527 CDS 100% 10.800 15.120 N SFSWAP n/a
3 TRCN0000178201 CAAGATCCTCATCGACAGATA pLKO.1 341 5UTR 100% 4.950 6.930 N Sfswap n/a
4 TRCN0000221596 GCACCAGTATAATGCTTATTA pLKO.1 1569 CDS 100% 15.000 12.000 N SFSWAP n/a
5 TRCN0000275325 GGAATCGACGTGACTACTTAC pLKO_005 1249 CDS 100% 10.800 8.640 N SFSWAP n/a
6 TRCN0000221600 CTGCCTACTTTAGAAGTTAAA pLKO.1 2050 CDS 100% 13.200 9.240 N SFSWAP n/a
7 TRCN0000221597 CCACCGAGAGAAGAAGAGAAA pLKO.1 2104 CDS 100% 4.950 3.465 N SFSWAP n/a
8 TRCN0000282007 GACCGTGGCAGCCATGTATTA pLKO_005 1176 CDS 100% 13.200 7.920 N SFSWAP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024449126.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06938 pDONR223 100% 74.4% 74.1% None (many diffs) n/a
2 ccsbBroad304_06938 pLX_304 0% 74.4% 74.1% V5 (many diffs) n/a
3 TRCN0000481596 ATTCAGGAAAGCCCAAGGATTCTG pLX_317 14% 74.4% 74.1% V5 (many diffs) n/a
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