Transcript: Human XM_024453223.1

PREDICTED: Homo sapiens thyroid hormone receptor interactor 12 (TRIP12), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRIP12 (9320)
Length:
10199
CDS:
204..6482

Additional Resources:

NCBI RefSeq record:
XM_024453223.1
NBCI Gene record:
TRIP12 (9320)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024453223.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000273136 TATCAGTCGATACTGGTATTA pLKO_005 4943 CDS 100% 13.200 18.480 N TRIP12 n/a
2 TRCN0000022377 CCGTATAACATGACTGTGTAT pLKO.1 4563 CDS 100% 4.950 6.930 N TRIP12 n/a
3 TRCN0000273207 GTATCTAAGACTGGTTATATT pLKO_005 5963 CDS 100% 15.000 10.500 N TRIP12 n/a
4 TRCN0000273210 CCACTACTCAGTCACCTAAAT pLKO_005 3526 CDS 100% 13.200 9.240 N TRIP12 n/a
5 TRCN0000273206 GTAGGCCTGATCATGGTTATA pLKO_005 6151 CDS 100% 13.200 9.240 N TRIP12 n/a
6 TRCN0000022376 CCCTAAAGTTAGCCTTCCTAA pLKO.1 1130 CDS 100% 4.950 3.465 N TRIP12 n/a
7 TRCN0000022375 CCGGAGTTTGAATCCACCTTT pLKO.1 6290 CDS 100% 4.950 3.465 N TRIP12 n/a
8 TRCN0000022374 CCTGAGTCAAGGAAACATGTT pLKO.1 6556 3UTR 100% 4.950 2.970 N TRIP12 n/a
9 TRCN0000273135 CCTGAGTCAAGGAAACATGTT pLKO_005 6556 3UTR 100% 4.950 2.970 N TRIP12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024453223.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.