Transcript: Mouse XM_030255574.1

PREDICTED: Mus musculus adiponectin receptor 2 (Adipor2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Adipor2 (68465)
Length:
3650
CDS:
354..1514

Additional Resources:

NCBI RefSeq record:
XM_030255574.1
NBCI Gene record:
Adipor2 (68465)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_030255574.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000277168 CTTCTGATGTGATCGTATTTA pLKO_005 1814 3UTR 100% 15.000 21.000 N Adipor2 n/a
2 TRCN0000175771 GCAGGAATTTCGTTTCATGAT pLKO.1 1460 CDS 100% 4.950 3.960 N Adipor2 n/a
3 TRCN0000277170 GCAGGAATTTCGTTTCATGAT pLKO_005 1460 CDS 100% 4.950 3.960 N Adipor2 n/a
4 TRCN0000277169 CTTATGGCTAGCCTCTATATC pLKO_005 1299 CDS 100% 13.200 9.240 N Adipor2 n/a
5 TRCN0000277172 GGACTCCAGAGCCAGATATAC pLKO_005 391 CDS 100% 13.200 9.240 N Adipor2 n/a
6 TRCN0000173201 CCATCATGCTATGGAACGAAT pLKO.1 605 CDS 100% 4.950 3.465 N Adipor2 n/a
7 TRCN0000277171 CCATCATGCTATGGAACGAAT pLKO_005 605 CDS 100% 4.950 3.465 N Adipor2 n/a
8 TRCN0000176423 CGGATAGAATTAAACCCACAA pLKO.1 3023 3UTR 100% 4.050 2.835 N Adipor2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_030255574.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04087 pDONR223 100% 89.8% 92.7% None (many diffs) n/a
2 ccsbBroad304_04087 pLX_304 0% 89.8% 92.7% V5 (many diffs) n/a
3 TRCN0000466625 ACGAGCATACTATGGCCATGTAGA pLX_317 30% 89.8% 92.7% V5 (many diffs) n/a
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