Construct: ORF TRCN0000466625
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008484.1_s317c1
- Derived from:
- ccsbBroadEn_04087
- DNA Barcode:
- ACGAGCATACTATGGCCATGTAGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ADIPOR2 (79602)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466625
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79602 | ADIPOR2 | adiponectin receptor 2 | NM_024551.3 | 100% | 100% | |
| 2 | human | 79602 | ADIPOR2 | adiponectin receptor 2 | XM_005253789.2 | 100% | 100% | |
| 3 | human | 79602 | ADIPOR2 | adiponectin receptor 2 | XM_006719018.2 | 100% | 100% | |
| 4 | human | 79602 | ADIPOR2 | adiponectin receptor 2 | XM_011521024.2 | 100% | 100% | |
| 5 | mouse | 68465 | Adipor2 | adiponectin receptor 2 | NM_001355692.1 | 89.8% | 92.7% | (many diffs) |
| 6 | mouse | 68465 | Adipor2 | adiponectin receptor 2 | NM_197985.4 | 89.8% | 92.7% | (many diffs) |
| 7 | mouse | 68465 | Adipor2 | adiponectin receptor 2 | XM_030255574.1 | 89.8% | 92.7% | (many diffs) |
| 8 | mouse | 68465 | Adipor2 | adiponectin receptor 2 | XM_030255575.1 | 73.9% | 79.7% | (many diffs) |
| 9 | mouse | 68465 | Adipor2 | adiponectin receptor 2 | XM_030255576.1 | 73.9% | 79.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1224
- ORF length:
- 1158
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa cgagccaaca gaaaaccgat tggggtgcag caggactcca gagccagata 121 taaggctcag aaaagggcac caactggatg gtacacgaag aggtgataat gacagccacc 181 aaggagattt ggagcccatt ttagaggcat ctgttctatc ttcccatcat aaaaaaagct 241 ctgaggaaca tgaatacagt gatgaagctc ctcaggaaga tgagggcttt atgggcatgt 301 cccctctctt acaagcccat catgctatgg aaaaaatgga agaatttgtt tgtaaggtat 361 gggaaggtcg gtggcgagtg atccctcatg atgtactacc agactggctc aaggataatg 421 acttcctctt gcatggacac cggcctccta tgccttcttt ccgggcctgt tttaagagca 481 ttttcagaat acacacagaa acaggcaaca tttggacaca tctcttaggt tgtgtattct 541 tcctgtgcct ggggatcttt tatatgtttc gcccaaatat ctcctttgtg gcccctctgc 601 aagagaaggt ggtctttgga ttatttttct taggagccat tctctgcctt tctttttcat 661 ggctcttcca cacagtctac tgccactcag agggggtctc tcggctcttc tctaaactgg 721 attactctgg tattgctctt ctgattatgg gaagttttgt tccttggctt tattattctt 781 tctactgtaa tccacaacct tgcttcatct acttgattgt catctgtgtg ctgggcattg 841 cagccattat agtctcccag tgggacatgt ttgccacccc TCAGTATCGG GGAGTAAGAG 901 CAGGAGTGTT TTTGGGCCTA GGCCTGAGTG GAATCATTCC TACCTTGCAC TATGTCATCT 961 CGGAGGGGTT CCTTAAGGCC GCCACCATAG GGCAGATAGG CTGGTTGATG CTGATGGCCA 1021 GCCTCTACAT CACAGGAGCT GCCCTGTATG CTGCCCGGAT CCCCGAACGC TTTTTCCCTG 1081 GCAAATGTGA CATCTGGTTT CACTCTCATC AGCTGTTTCA TATCTTTGTG GTTGCTGGAG 1141 CTTTTGTTCA CTTCCATGGT GTCTCAAACC TCCAGGAGTT TCGTTTCATG ATCGGCGGGG 1201 GCTGCAGTGA AGAGGATGCA CTGTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 1261 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 1321 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA CGAGCATACT 1381 ATGGCCATGT AGAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 1441 att