Transcript: Human XR_001738586.1

PREDICTED: Homo sapiens signal transducing adaptor molecule 2 (STAM2), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
STAM2 (10254)
Length:
5332
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001738586.1
NBCI Gene record:
STAM2 (10254)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001738586.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000056777 GCCTGCTCAAACTTCATATTT pLKO.1 1307 3UTR 100% 15.000 12.000 N STAM2 n/a
2 TRCN0000056774 GCACTGGACAAGACACTGTTT pLKO.1 1330 3UTR 100% 4.950 3.960 N STAM2 n/a
3 TRCN0000380808 GAAGTACGTGCTGTGATTAAA pLKO_005 409 3UTR 100% 15.000 10.500 N STAM2 n/a
4 TRCN0000306340 AGAAGTATGTTCCCGTGATTT pLKO_005 381 3UTR 100% 13.200 9.240 N Stam2 n/a
5 TRCN0000306339 AGTCTGATATCTGCAACTATT pLKO_005 514 3UTR 100% 13.200 9.240 N Stam2 n/a
6 TRCN0000306338 TTTAGCTTGCCAGCATATTTC pLKO_005 2109 3UTR 100% 13.200 9.240 N Stam2 n/a
7 TRCN0000056773 GCACGGAAAGTGAGAGCTTTA pLKO.1 745 3UTR 100% 10.800 7.560 N STAM2 n/a
8 TRCN0000056776 CTACAGAAGATTGGAGTCTTA pLKO.1 200 3UTR 100% 4.950 3.465 N STAM2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001738586.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10452 pDONR223 100% 25.8% None (many diffs) n/a
2 ccsbBroad304_10452 pLX_304 0% 25.8% V5 (many diffs) n/a
3 TRCN0000474493 GTTTCGCGACTGAAGTTATGTAAA pLX_317 26% 25.8% V5 (many diffs) n/a
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