Transcript: Human XR_001741117.1

PREDICTED: Homo sapiens ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 (ARAP2), transcript variant X15, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ARAP2 (116984)
Length:
7971
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001741117.1
NBCI Gene record:
ARAP2 (116984)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001741117.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000435812 GGAACCCGACTGTAGTATTAT pLKO_005 4779 3UTR 100% 15.000 21.000 N ARAP2 n/a
2 TRCN0000149503 GCTATCATTGAACACCTGTAT pLKO.1 4492 3UTR 100% 4.950 6.930 N ARAP2 n/a
3 TRCN0000418014 CATCTGCAAAGAAGGTTAAAT pLKO_005 2204 3UTR 100% 15.000 10.500 N ARAP2 n/a
4 TRCN0000432416 TCACCGTAGGAGGATACTTAA pLKO_005 933 3UTR 100% 13.200 9.240 N ARAP2 n/a
5 TRCN0000182989 CATCTAAATCTAGGACTCAAA pLKO.1 2063 3UTR 100% 4.950 3.465 N ARAP2 n/a
6 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 6404 3UTR 100% 2.640 1.320 Y LINC01098 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001741117.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.