Transcript: Human XR_001743524.1

PREDICTED: Homo sapiens ARFGEF family member 3 (ARFGEF3), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ARFGEF3 (57221)
Length:
12197
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001743524.1
NBCI Gene record:
ARFGEF3 (57221)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001743524.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000122518 CCACAGGATTTCGGGAATCAA pLKO.1 962 3UTR 100% 5.625 4.500 N ARFGEF3 n/a
2 TRCN0000433132 CCGACCTTTCGAGCGCATTAT pLKO_005 4168 3UTR 100% 13.200 9.240 N ARFGEF3 n/a
3 TRCN0000143263 GCCATCACACAAGTGAAACTA pLKO.1 3281 3UTR 100% 5.625 3.938 N ARFGEF3 n/a
4 TRCN0000144294 CCAACTCTGGATTTACTCTTT pLKO.1 4820 3UTR 100% 4.950 3.465 N ARFGEF3 n/a
5 TRCN0000140988 CTCTACTTTCTGCTCAGGCAT pLKO.1 2509 3UTR 100% 2.640 1.848 N ARFGEF3 n/a
6 TRCN0000252870 TTGATTCCTGTGATCAGTATT pLKO_005 2220 3UTR 100% 13.200 9.240 N Arfgef3 n/a
7 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 7667 3UTR 100% 10.800 5.400 Y SMIM11A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001743524.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.