Transcript: Human XR_001746260.1

PREDICTED: Homo sapiens vacuolar protein sorting 13 homolog A (VPS13A), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
VPS13A (23230)
Length:
15595
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001746260.1
NBCI Gene record:
VPS13A (23230)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001746260.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000382425 GAAGGTTTACAACGCATTATT pLKO_005 7829 3UTR 100% 15.000 21.000 N VPS13A n/a
2 TRCN0000118767 GCGGTCTTTCAAGAAATGTAT pLKO.1 4850 3UTR 100% 5.625 4.500 N VPS13A n/a
3 TRCN0000118769 CCGAGCATTCTACAGTTATTA pLKO.1 7539 3UTR 100% 15.000 10.500 N VPS13A n/a
4 TRCN0000118771 GCAGGATTGTTCAGTAAATAT pLKO.1 2965 3UTR 100% 15.000 10.500 N VPS13A n/a
5 TRCN0000118768 GCCTTCAGAAACTGAAATAAA pLKO.1 3613 3UTR 100% 15.000 10.500 N VPS13A n/a
6 TRCN0000380706 ATCGAAAGCATCCACCTAATT pLKO_005 7050 3UTR 100% 13.200 9.240 N VPS13A n/a
7 TRCN0000122024 GCTTCTTGAATCAGTTGATAT pLKO.1 1252 3UTR 100% 13.200 9.240 N VPS13A n/a
8 TRCN0000118770 GCAGAGAAGAAGCTAAAGATT pLKO.1 8706 3UTR 100% 5.625 3.938 N VPS13A n/a
9 TRCN0000121638 GCTTAGTTTCTGGATTTGTTA pLKO.1 9249 3UTR 100% 5.625 3.938 N VPS13A n/a
10 TRCN0000379951 TGTGGTCATGGAAGCATATTA pLKO_005 1398 3UTR 100% 15.000 9.000 N VPS13A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001746260.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.