Transcript: Human XR_001751367.1

PREDICTED: Homo sapiens ATPase phospholipid transporting 10A (putative) (ATP10A), transcript variant X9, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ATP10A (57194)
Length:
3763
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001751367.1
NBCI Gene record:
ATP10A (57194)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001751367.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000376424 GCGTCTTCGCTGCAACGAAAT pLKO_005 1345 3UTR 100% 10.800 15.120 N ATP10A n/a
2 TRCN0000051083 CGGCTGCATCATACATGACAA pLKO.1 1570 3UTR 100% 4.950 3.960 N ATP10A n/a
3 TRCN0000364780 ACGGAGTCCCTGAAACTATTT pLKO_005 3444 3UTR 100% 13.200 9.240 N ATP10A n/a
4 TRCN0000051084 GCCAAGAGAGTTCTGAGTAAA pLKO.1 3278 3UTR 100% 13.200 9.240 N ATP10A n/a
5 TRCN0000377328 GAATATTCTCATGATGCAAAT pLKO_005 2180 3UTR 100% 10.800 7.560 N ATP10A n/a
6 TRCN0000051086 CCTTATACGTTTCCATTGAAA pLKO.1 1965 3UTR 100% 5.625 3.938 N ATP10A n/a
7 TRCN0000369468 GCAGTTGTATGACGAAGAAAC pLKO_005 2026 3UTR 100% 10.800 6.480 N ATP10A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001751367.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.