Transcript: Human XR_001752531.1

PREDICTED: Homo sapiens LUC7 like 3 pre-mRNA splicing factor (LUC7L3), transcript variant X9, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LUC7L3 (51747)
Length:
3664
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001752531.1
NBCI Gene record:
LUC7L3 (51747)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001752531.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000075115 CCGGGATCGAAAGTCATATAA pLKO.1 1201 3UTR 100% 15.000 21.000 N LUC7L3 n/a
2 TRCN0000286282 CCGGGATCGAAAGTCATATAA pLKO_005 1201 3UTR 100% 15.000 21.000 N LUC7L3 n/a
3 TRCN0000293729 AGGTCCACAACGTCGACAATT pLKO_005 653 3UTR 100% 13.200 18.480 N LUC7L3 n/a
4 TRCN0000293728 TGATCGTGATGAGCGTCTAAA pLKO_005 859 3UTR 100% 13.200 18.480 N LUC7L3 n/a
5 TRCN0000075117 CCGGGTAGATGACCATTTGAT pLKO.1 754 3UTR 100% 5.625 7.875 N LUC7L3 n/a
6 TRCN0000075116 GCCGAACATCAGACAGAAGAT pLKO.1 1038 3UTR 100% 4.950 3.960 N LUC7L3 n/a
7 TRCN0000286216 GCCGAACATCAGACAGAAGAT pLKO_005 1038 3UTR 100% 4.950 3.960 N LUC7L3 n/a
8 TRCN0000305454 GGGACCAGTGAAGACATTAAA pLKO_005 1514 3UTR 100% 15.000 10.500 N Luc7l3 n/a
9 TRCN0000075114 CCTGCGGAATTGTTCACAAAT pLKO.1 266 3UTR 100% 13.200 9.240 N LUC7L3 n/a
10 TRCN0000375023 CCTGCGGAATTGTTCACAAAT pLKO_005 266 3UTR 100% 13.200 9.240 N Luc7l3 n/a
11 TRCN0000075113 GCATAAAGTGAAGATCGACAT pLKO.1 1634 3UTR 100% 4.050 2.835 N LUC7L3 n/a
12 TRCN0000286218 GCATAAAGTGAAGATCGACAT pLKO_005 1634 3UTR 100% 4.050 2.835 N LUC7L3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001752531.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12015 pDONR223 100% 6% None (many diffs) n/a
2 ccsbBroad304_12015 pLX_304 0% 6% V5 (many diffs) n/a
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