Transcript: Human XR_001754319.2

PREDICTED: Homo sapiens taspase 1 (TASP1), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TASP1 (55617)
Length:
1865
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001754319.2
NBCI Gene record:
TASP1 (55617)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001754319.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000032342 CGCACCATACTGGCTAGAGAA pLKO.1 1006 3UTR 100% 4.950 6.930 N Tasp1 n/a
2 TRCN0000005965 GCACCATACTGGCTAGAGAAT pLKO.1 1007 3UTR 100% 4.950 6.930 N TASP1 n/a
3 TRCN0000425987 AGGAATGGGATCTAATCTAAA pLKO_005 414 3UTR 100% 13.200 10.560 N TASP1 n/a
4 TRCN0000005964 CGAGCTTGTCAGAAGGCAATT pLKO.1 310 3UTR 100% 10.800 8.640 N TASP1 n/a
5 TRCN0000421536 GAAACAAAGCAGTCCTATAAA pLKO_005 202 3UTR 100% 15.000 10.500 N TASP1 n/a
6 TRCN0000005966 CGGTTGCCAACAGACTCTTAT pLKO.1 533 3UTR 100% 13.200 9.240 N TASP1 n/a
7 TRCN0000415046 TCTCAGGTTTCGGCTGGTAAA pLKO_005 163 3UTR 100% 10.800 7.560 N TASP1 n/a
8 TRCN0000425319 TGCATGCAGGTGCAGGTTATC pLKO_005 248 3UTR 100% 10.800 7.560 N TASP1 n/a
9 TRCN0000005967 CAAGTTTATCAGTTCACCTTT pLKO.1 1086 3UTR 100% 4.950 3.465 N TASP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001754319.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489233 CCTGGCGAGCATCCCAATCAAGTT pLX_317 28.7% 66.1% V5 (many diffs) n/a
2 TRCN0000487713 TCCGCTATTGTCCTTTTATGTTTA pLX_317 18.6% 65.8% V5 (not translated due to prior stop codon) (many diffs) n/a
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