Transcript: Mouse XR_001778481.1

PREDICTED: Mus musculus multivesicular body subunit 12A (Mvb12a), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mvb12a (73711)
Length:
2213
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001778481.1
NBCI Gene record:
Mvb12a (73711)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001778481.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000201951 CTATGAGGCATCCAGTCTCTA pLKO.1 682 3UTR 100% 4.950 3.960 N Mvb12a n/a
2 TRCN0000282987 AGACATTGAGAAGGAGTATAA pLKO_005 1933 3UTR 100% 13.200 9.240 N Mvb12a n/a
3 TRCN0000264307 AGTCAACGACCCTCAGGATAT pLKO_005 337 3UTR 100% 10.800 7.560 N Mvb12a n/a
4 TRCN0000264308 ATCCAGTCTCTATGGCATATC pLKO_005 691 3UTR 100% 10.800 7.560 N Mvb12a n/a
5 TRCN0000264306 CCTTGCAGATACTGCTGATTG pLKO_005 2044 3UTR 100% 10.800 7.560 N Mvb12a n/a
6 TRCN0000164941 GCCTCTGTGTCCAAGAAGAAA pLKO.1 362 3UTR 100% 5.625 3.938 N MVB12A n/a
7 TRCN0000166318 CTTTGCCATCTGGTGCAAGAA pLKO.1 499 3UTR 100% 4.950 3.465 N MVB12A n/a
8 TRCN0000264309 CTTTGCCATCTGGTGCAAGAA pLKO_005 499 3UTR 100% 4.950 3.465 N Mvb12a n/a
9 TRCN0000165483 GAAACGCATGTGTGTGAAGCT pLKO.1 379 3UTR 100% 2.640 1.848 N MVB12A n/a
10 TRCN0000192552 GAAGGAGTATAACTATGGCTT pLKO.1 1942 3UTR 100% 2.640 1.848 N Mvb12a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001778481.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.