Transcript: Mouse XR_001780045.1

PREDICTED: Mus musculus LUC7-like 3 (S. cerevisiae) (Luc7l3), transcript variant X7, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Luc7l3 (67684)
Length:
3621
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001780045.1
NBCI Gene record:
Luc7l3 (67684)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001780045.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000123509 GCCATAGTATAGAGGAATAAT pLKO.1 2695 3UTR 100% 15.000 21.000 N Luc7l3 n/a
2 TRCN0000305510 GTGTAGGGTTTATGAATTATT pLKO_005 2241 3UTR 100% 15.000 21.000 N Luc7l3 n/a
3 TRCN0000123513 TGAGAAGAGTTCTCGCTTTAT pLKO.1 407 3UTR 100% 13.200 18.480 N Luc7l3 n/a
4 TRCN0000316928 TGAGAAGAGTTCTCGCTTTAT pLKO_005 407 3UTR 100% 13.200 18.480 N Luc7l3 n/a
5 TRCN0000123511 CGCAGAATTAGACGAGGTCAT pLKO.1 489 3UTR 100% 4.050 5.670 N Luc7l3 n/a
6 TRCN0000123512 GCCGAGATCGAAAGTCATATA pLKO.1 1407 3UTR 100% 13.200 10.560 N Luc7l3 n/a
7 TRCN0000317005 GCCGAGATCGAAAGTCATATA pLKO_005 1407 3UTR 100% 13.200 10.560 N Luc7l3 n/a
8 TRCN0000305454 GGGACCAGTGAAGACATTAAA pLKO_005 1595 3UTR 100% 15.000 10.500 N Luc7l3 n/a
9 TRCN0000075114 CCTGCGGAATTGTTCACAAAT pLKO.1 327 3UTR 100% 13.200 9.240 N LUC7L3 n/a
10 TRCN0000375023 CCTGCGGAATTGTTCACAAAT pLKO_005 327 3UTR 100% 13.200 9.240 N Luc7l3 n/a
11 TRCN0000374966 CTCTACCCACATCCGTGTTTG pLKO_005 2377 3UTR 100% 10.800 7.560 N Luc7l3 n/a
12 TRCN0000123510 GCCGAGTAAGAAGACATACAA pLKO.1 1764 3UTR 100% 5.625 3.938 N Luc7l3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001780045.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12015 pDONR223 100% 5.6% None (many diffs) n/a
2 ccsbBroad304_12015 pLX_304 0% 5.6% V5 (many diffs) n/a
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