Transcript: Mouse XR_001780830.1

PREDICTED: Mus musculus AT rich interactive domain 4B (RBP1-like) (Arid4b), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Arid4b (94246)
Length:
4282
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001780830.1
NBCI Gene record:
Arid4b (94246)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001780830.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000111956 CGCCTTCTTCAGTCACTATAA pLKO.1 3429 3UTR 100% 13.200 10.560 N Arid4b n/a
2 TRCN0000341085 CGCCTTCTTCAGTCACTATAA pLKO_005 3429 3UTR 100% 13.200 10.560 N Arid4b n/a
3 TRCN0000111957 CGTATCTCAATTCTTCAAGAA pLKO.1 4190 3UTR 100% 4.950 3.960 N Arid4b n/a
4 TRCN0000341008 CGTATCTCAATTCTTCAAGAA pLKO_005 4190 3UTR 100% 4.950 3.960 N Arid4b n/a
5 TRCN0000111958 CGAAGCCTGATGCTGTATTAA pLKO.1 1053 3UTR 100% 15.000 10.500 N Arid4b n/a
6 TRCN0000341083 CGAAGCCTGATGCTGTATTAA pLKO_005 1053 3UTR 100% 15.000 10.500 N Arid4b n/a
7 TRCN0000111959 GCAGAAATGAACTGATTTCAA pLKO.1 2568 3UTR 100% 0.563 0.394 N Arid4b n/a
8 TRCN0000341006 GCAGAAATGAACTGATTTCAA pLKO_005 2568 3UTR 100% 0.563 0.394 N Arid4b n/a
9 TRCN0000138934 GAAGAGGAGGAGGAAGAAGAA pLKO.1 1961 3UTR 100% 4.950 2.475 Y PTMA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001780830.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.