Transcript: Mouse XR_001781473.1

PREDICTED: Mus musculus peroxisomal biogenesis factor 16 (Pex16), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Pex16 (18633)
Length:
1676
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001781473.1
NBCI Gene record:
Pex16 (18633)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001781473.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000285629 AGCGGGAAATTCGGCAGAAAC pLKO_005 1118 3UTR 100% 10.800 7.560 N Pex16 n/a
2 TRCN0000285626 CCTTGGATGGTGACCACAATC pLKO_005 992 3UTR 100% 10.800 7.560 N Pex16 n/a
3 TRCN0000181399 CTACTGTCTGGTGTGGTAGAT pLKO.1 1280 3UTR 100% 4.950 3.465 N Pex16 n/a
4 TRCN0000285630 CTACTGTCTGGTGTGGTAGAT pLKO_005 1280 3UTR 100% 4.950 3.465 N Pex16 n/a
5 TRCN0000198545 GATTCACACGAGCTGTCTGAA pLKO.1 661 3UTR 100% 4.950 3.465 N Pex16 n/a
6 TRCN0000276741 GATTCACACGAGCTGTCTGAA pLKO_005 661 3UTR 100% 4.950 3.465 N Pex16 n/a
7 TRCN0000198559 GAGTATGTGACTCGTCATCCA pLKO.1 574 3UTR 100% 2.640 1.848 N Pex16 n/a
8 TRCN0000181987 CTGCTGCTATACTACCTGCTA pLKO.1 1379 3UTR 100% 2.640 1.584 N Pex16 n/a
9 TRCN0000276787 CTGCTGCTATACTACCTGCTA pLKO_005 1379 3UTR 100% 2.640 1.584 N Pex16 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001781473.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07413 pDONR223 100% 52.2% None (many diffs) n/a
2 ccsbBroad304_07413 pLX_304 0% 52.2% V5 (many diffs) n/a
3 TRCN0000465926 TTATATACAGTCTTATCATTAACC pLX_317 23.7% 52.2% V5 (many diffs) n/a
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