Transcript: Human XR_002956282.1

PREDICTED: Homo sapiens adenosine monophosphate deaminase 2 (AMPD2), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
AMPD2 (271)
Length:
3833
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002956282.1
NBCI Gene record:
AMPD2 (271)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002956282.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413486 GGGTATCTGGGAAGTACTTTG pLKO_005 1946 3UTR 100% 10.800 15.120 N AMPD2 n/a
2 TRCN0000051795 CATCGCTTTGACAAGTTTAAT pLKO.1 1864 3UTR 100% 15.000 10.500 N AMPD2 n/a
3 TRCN0000446841 ATGTGCTGGAACGGGAGTTTC pLKO_005 1049 3UTR 100% 10.800 7.560 N AMPD2 n/a
4 TRCN0000051796 CCAAGGCCAAATATCCCTTTA pLKO.1 736 3UTR 100% 10.800 7.560 N AMPD2 n/a
5 TRCN0000051797 GCGCTTCATCAAGCGGGCAAT pLKO.1 1704 3UTR 100% 0.135 0.095 N AMPD2 n/a
6 TRCN0000051794 GCCTCTTTGATGTGTACCGTA pLKO.1 2138 3UTR 100% 2.640 1.584 N AMPD2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002956282.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00063 pDONR223 100% 56.6% None (many diffs) n/a
2 ccsbBroad304_00063 pLX_304 0% 56.6% V5 (many diffs) n/a
3 TRCN0000471533 AAATGCGGGGTAGAGTTCTGCGTG pLX_317 16.1% 56.6% V5 (many diffs) n/a
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