Construct: ORF TRCN0000471533

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009180.1_s317c1
Derived from:
ccsbBroadEn_00063
DNA Barcode:
AAATGCGGGGTAGAGTTCTGCGTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AMPD2 (271)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471533
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 271 AMPD2 adenosine monophosphate dea... NM_139156.3 100% 100%
2 human 271 AMPD2 adenosine monophosphate dea... NM_001368809.2 96.6% 96.4% 1_70del;71_72insT;77_88del
3 human 271 AMPD2 adenosine monophosphate dea... NM_004037.9 96.6% 96.4% 1_70del;71_72insT;77_88del
4 human 271 AMPD2 adenosine monophosphate dea... NM_001308170.1 95.5% 93.2% (many diffs)
5 human 271 AMPD2 adenosine monophosphate dea... XM_024446431.1 95.5% 93.2% (many diffs)
6 human 271 AMPD2 adenosine monophosphate dea... NM_001257361.1 95.3% 95.3% 0_1ins111
7 human 271 AMPD2 adenosine monophosphate dea... XM_024446432.1 85.8% 80.9% (many diffs)
8 human 271 AMPD2 adenosine monophosphate dea... XR_002956282.1 56.6% (many diffs)
9 mouse 109674 Ampd2 adenosine monophosphate dea... NM_001289719.1 90.2% 97.4% (many diffs)
10 mouse 109674 Ampd2 adenosine monophosphate dea... NM_028779.5 90.2% 97.4% (many diffs)
11 mouse 109674 Ampd2 adenosine monophosphate dea... NM_001346665.1 87.2% 94.1% (many diffs)
12 mouse 109674 Ampd2 adenosine monophosphate dea... XM_006500871.3 86.6% 91.9% (many diffs)
13 mouse 109674 Ampd2 adenosine monophosphate dea... NM_001289720.1 86.1% 92.9% (many diffs)
14 mouse 109674 Ampd2 adenosine monophosphate dea... XM_006500870.3 84.8% 91.9% (many diffs)
15 mouse 109674 Ampd2 adenosine monophosphate dea... XM_011239985.2 84.8% 91.9% (many diffs)
16 mouse 109674 Ampd2 adenosine monophosphate dea... XM_017319424.1 64.3% 69.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2460
ORF length:
2394
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ctcagaggct cggggtggtc tgggggcccc tccgctgcag tctgcccgat
121ccctgccggg ccccgccccc tgcctcaagc acttcccgct cgacctgcgc acgtctatgg
181atggcaaatg caaggagatc gccgaggagc tgttcacccg ctcactggct gagagcgagc
241tccgtagtgc cccgtatgag ttccccgagg agagccccat tgaacagctg gaggagcggc
301ggcagcggct ggagcggcag atcagccagg atgtcaagct ggagccagac atcctgcttc
361gggccaagca agatttcctg aagacggaca gtgactcgga cctacagctc tacaaggaac
421agggtgaggg gcagggtgac cggagcctgc gggagcgtga tgtgctggaa cgggagtttc
481agcgggtcac catctctggg gaggagaagt gtggggtgcc gttcacagac ctgctggatg
541cagccaagag tgtggtgcgg gcgctcttca tccgggagaa gtacatggcc ctgtccctgc
601agagcttctg ccccaccacc cgccgctacc tgcagcagct ggctgaaaag cctctggaga
661cccggaccta tgaacagggc cccgacaccc ctgtgtctgc tgatgccccg gtgcaccccc
721ctgcgctgga gcagcacccg tatgagcact gtgagccaag caccatgcct ggggacctgg
781gcttgggtct gcgcatggtg cggggtgtgg tgcacgtcta cacccgcagg gaacccgacg
841agcattgctc agaggtggag ctgccatacc ctgacctgca ggaatttgtg gctgacgtca
901atgtgctgat ggccctgatt atcaatggcc ccataaagtc attctgctac cgccggctgc
961agtacctgag ctccaagttc cagatgcatg tgctactcaa tgagatgaag gagctggccg
1021cccagaagaa agtgccacac cgagatttct acaacatccg caaggtggac acccacatcc
1081atgcctcgtc ctgcatgaac cagaagcatc tgctgcgctt catcaagcgg gcaatgaagc
1141ggcacctgga ggagatcgtg cacgtggagc agggccgtga acagacgctg cgggaggtct
1201ttgagagcat gaatctcacg gcctacgacc tgagtgtgga cacgctggat gtgcatgcgg
1261acaggaacac tttccatcgc tttgacaagt ttaatgccaa atacaaccct attggggagt
1321ccgtcctccg agagatcttc atcaagacgg acaacagggt atctgggaag tactttgctc
1381acatcatcaa ggaggtgatg tcagacctgg aggagagcaa ataccagaat gcagagctgc
1441ggctctccat ttacgggcgc tcgagggatg agtgggacaa gctggcgcgc tgggccgtca
1501tgcaccgcgt gcactccccc aacgtgcgct ggctggtgca ggtgccccgc ctctttgatg
1561tgtaccgtac caagggccag ctggccaact tccaggagat gctggagaac atcttcctgc
1621cactgttcga ggccactgtg caccctgcca gccacccgga actgcatctc ttcttagagc
1681acgtggatgg ttttgacagc gtggatgatg agtccaagcc tgaaaaccat gtcttcaacc
1741tggagagccc cctgcctgag gcgtgggtgg aggaggacaa cccaccctat gcctactacc
1801tgtactacac ctttgccaac atggccatgt tgaaccacct gcgcaggcag aggggcttcc
1861acacgtttgt gctgaggcca cactgtgggg aggctgggcc catccaccac ctggtgtcag
1921ccttcatgct ggctgagaac atttcccacg ggctccttct gcgcaaggcc cccgtcctgc
1981agtacctgta ctacctggcc cagatcggca tcgccatgtc tccgctcagc aacaacagcc
2041tcttcctcag ctatcaccgg aatccgctac cggagtaccT GTCCCGCGGC CTCATGGTCT
2101CCCTGTCCAC TGATGATCCC TTGCAGTTCC ACTTCACCAA GGAGCCGCTG ATGGAGGAGT
2161ACAGCATCGC CACCCAGGTG TGGAAGCTCA GCTCCTGCGA TATGTGTGAG CTGGCCCGCA
2221ACAGCGTGCT CATGAGCGGC TTCTCGCACA AGGTAAAGAG CCACTGGCTG GGACCCAACT
2281ATACCAAGGA AGGCCCTGAG GGGAATGACA TCCGCCGGAC CAATGTGCCA GACATCCGCG
2341TGGGCTACCG CTACGAGACC CTGTGCCAGG AGCTGGCGCT CATCACGCAG GCAGTCCAGA
2401GTGAGATGCT GGAGACCATT CCAGAGGAGG CGGGTATCAC CATGAGCCCA GGGCCTCAAT
2461GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
2521GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
2581TTTATATATC TTGTGGAAAG GACGAAAATG CGGGGTAGAG TTCTGCGTGA CGCGTTAAGT
2641Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)