Transcript: Human XR_002959843.1

PREDICTED: Homo sapiens solute carrier family 25 member 48 (SLC25A48), transcript variant X15, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC25A48 (153328)
Length:
7138
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002959843.1
NBCI Gene record:
SLC25A48 (153328)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002959843.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000166137 CAGATGCAGACACAACCGTTT pLKO.1 387 3UTR 100% 4.050 5.670 N SLC25A48 n/a
2 TRCN0000164906 GTCTACAACTCCGTGGTGTTT pLKO.1 204 3UTR 100% 4.950 3.960 N SLC25A48 n/a
3 TRCN0000164878 GAGAGTATGTTCGGCTTCTTC pLKO.1 150 3UTR 100% 4.950 3.465 N SLC25A48 n/a
4 TRCN0000161226 GAGTATGTTCGGCTTCTTCAA pLKO.1 152 3UTR 100% 4.950 3.465 N SLC25A48 n/a
5 TRCN0000165403 CATCAAGATCCGGTTGCAGAT pLKO.1 371 3UTR 100% 4.050 2.835 N SLC25A48 n/a
6 TRCN0000165730 CTTCTTCAAGGGCATGTCCTT pLKO.1 164 3UTR 100% 2.640 1.584 N SLC25A48 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002959843.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09695 pDONR223 100% 5.9% None (many diffs) n/a
2 ccsbBroad304_09695 pLX_304 0% 5.9% V5 (many diffs) n/a
3 TRCN0000465292 CTTGTGTCCGAAAAACGAACGGCA pLX_317 45.4% 5.9% V5 (many diffs) n/a
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