Transcript: Human XR_428714.3

PREDICTED: Homo sapiens annexin A8 (ANXA8), transcript variant X10, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANXA8 (653145)
Length:
2014
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_428714.3
NBCI Gene record:
ANXA8 (653145)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_428714.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256102 ATGTACCCGCCATACAGATAC pLKO_005 649 3UTR 100% 10.800 6.480 N ANXA8L1 n/a
2 TRCN0000256101 AGGAGCGAGATTGACTTAAAT pLKO_005 1145 3UTR 100% 15.000 7.500 Y ANXA8L1 n/a
3 TRCN0000256103 AGAACCAGCTGCGGGAGATAA pLKO_005 752 3UTR 100% 13.200 6.600 Y ANXA8L1 n/a
4 TRCN0000262791 CAAGGAGCGAGATTGACTTAA pLKO_005 1143 3UTR 100% 13.200 6.600 Y ANXA8 n/a
5 TRCN0000262794 GAACCAGCTGCGGGAGATAAT pLKO_005 753 3UTR 100% 13.200 6.600 Y ANXA8 n/a
6 TRCN0000256100 GTCTCCTGGGCACAGGTTATA pLKO_005 1491 3UTR 100% 13.200 6.600 Y ANXA8L1 n/a
7 TRCN0000262795 TCTCCTGGGCACAGGTTATAC pLKO_005 1492 3UTR 100% 13.200 6.600 Y ANXA8 n/a
8 TRCN0000262793 TGGGACTGATGAGATGAAATT pLKO_005 880 3UTR 100% 13.200 6.600 Y ANXA8 n/a
9 TRCN0000437273 AGGCTCATTGTGGCCCTTATG pLKO_005 631 3UTR 100% 10.800 5.400 Y ANXA8L1 n/a
10 TRCN0000256104 TTGCAGAGAGACTCTACTATG pLKO_005 1071 3UTR 100% 10.800 5.400 Y ANXA8L1 n/a
11 TRCN0000055945 CGTGGGACTGATGAGATGAAA pLKO.1 878 3UTR 100% 5.625 2.813 Y ANXA8L1 n/a
12 TRCN0000055944 CCCTGATAAGAAACATCGTTT pLKO.1 1122 3UTR 100% 4.950 2.475 Y ANXA8L1 n/a
13 TRCN0000055947 GACCCTCTACAAAGCCATGAA pLKO.1 462 3UTR 100% 4.950 2.475 Y ANXA8L1 n/a
14 TRCN0000055943 CGGGAGATAATGAAGGCGTAT pLKO.1 763 3UTR 100% 4.050 2.025 Y ANXA8L1 n/a
15 TRCN0000055946 GCGAGATTGACTTAAATCTTA pLKO.1 1149 3UTR 100% 0.563 0.281 Y ANXA8L1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_428714.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05724 pDONR223 98.6% 43% None 1_378del;788_789ins80;1280_2014del n/a
2 ccsbBroad304_05724 pLX_304 0% 43% V5 (not translated due to prior stop codon) 1_378del;788_789ins80;1280_2014del n/a
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