Transcript: Mouse XR_868502.1

PREDICTED: Mus musculus nuclear receptor co-repressor 2 (Ncor2), transcript variant X28, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ncor2 (20602)
Length:
8829
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_868502.1
NBCI Gene record:
Ncor2 (20602)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_868502.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095283 CCAGATCATCTACGATGAGAA pLKO.1 1056 3UTR 100% 4.950 6.930 N Ncor2 n/a
2 TRCN0000095281 CCAGTGTAAGAACTTCTACTT pLKO.1 2304 3UTR 100% 4.950 6.930 N Ncor2 n/a
3 TRCN0000095279 CCTGTCTAAAGCCTTAACTAA pLKO.1 7984 3UTR 100% 5.625 4.500 N Ncor2 n/a
4 TRCN0000238140 TCCTCGCTGGCCCTCAATTAT pLKO_005 5548 3UTR 100% 15.000 10.500 N Ncor2 n/a
5 TRCN0000238139 TGTTGGCTTACAGGGTATATT pLKO_005 8499 3UTR 100% 15.000 10.500 N Ncor2 n/a
6 TRCN0000257077 ACGAGCCAGAATACAATATTG pLKO_005 7158 3UTR 100% 13.200 9.240 N Ncor2 n/a
7 TRCN0000238142 GAAAGGCACTCATGGGTAAAT pLKO_005 7299 3UTR 100% 13.200 9.240 N Ncor2 n/a
8 TRCN0000296045 GAAAGGCACTCATGGGTAAAT pLKO_005 7299 3UTR 100% 13.200 9.240 N NCOR2 n/a
9 TRCN0000238141 GCACATCAGTGAGGTCATTAC pLKO_005 6673 3UTR 100% 10.800 7.560 N Ncor2 n/a
10 TRCN0000060703 GCCTGTCTAAAGCCTTAACTA pLKO.1 7983 3UTR 100% 5.625 3.938 N NCOR2 n/a
11 TRCN0000298963 GCCTGTCTAAAGCCTTAACTA pLKO_005 7983 3UTR 100% 5.625 3.938 N NCOR2 n/a
12 TRCN0000095280 CCTAAGAACTTTGGCCTGATT pLKO.1 1717 3UTR 100% 4.950 3.465 N Ncor2 n/a
13 TRCN0000095282 CCCTAAGAACTTTGGCCTGAT pLKO.1 1716 3UTR 100% 4.050 2.835 N Ncor2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_868502.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.