Transcript: Human XR_923047.2

PREDICTED: Homo sapiens major facilitator superfamily domain containing 9 (MFSD9), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MFSD9 (84804)
Length:
3862
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_923047.2
NBCI Gene record:
MFSD9 (84804)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_923047.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000005747 GCCGCTTGTAATCGGACACTT pLKO.1 527 3UTR 100% 4.950 6.930 N MFSD9 n/a
2 TRCN0000434739 GTCATGCTGTACTACAGTAAC pLKO_005 927 3UTR 100% 10.800 8.640 N MFSD9 n/a
3 TRCN0000005745 GCTGGTCTCGTTTGGTTCTTT pLKO.1 666 3UTR 100% 5.625 4.500 N MFSD9 n/a
4 TRCN0000010963 GCCACCAATGTGTTTCTGTTT pLKO.1 417 3UTR 100% 4.950 3.960 N MFSD9 n/a
5 TRCN0000005746 CTAGTGGTGATGGGAATAGTA pLKO.1 1420 3UTR 100% 0.000 0.000 N MFSD9 n/a
6 TRCN0000417729 TCCGAAATGTGGGACATATTT pLKO_005 879 3UTR 100% 15.000 10.500 N MFSD9 n/a
7 TRCN0000425727 GATGGATTTGGACAACATAAA pLKO_005 1457 3UTR 100% 13.200 9.240 N MFSD9 n/a
8 TRCN0000424942 GTGGCTATCTCACTGAATTAG pLKO_005 592 3UTR 100% 13.200 9.240 N MFSD9 n/a
9 TRCN0000418315 CATCTCAAGGGCTCTACTTTC pLKO_005 482 3UTR 100% 10.800 7.560 N MFSD9 n/a
10 TRCN0000420031 TGTTAGCCTTAGTGGCCATTT pLKO_005 1372 3UTR 100% 10.800 7.560 N MFSD9 n/a
11 TRCN0000101988 CATGCTGTACTACAGTAACTT pLKO.1 929 3UTR 100% 5.625 3.938 N Mfsd9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_923047.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09224 pDONR223 98.8% 36.7% None 1_32del;1367C>T;1455_3862del n/a
2 ccsbBroad304_09224 pLX_304 0% 36.7% V5 1_32del;1367C>T;1455_3862del n/a
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