Transcript: Human XR_929338.2

PREDICTED: Homo sapiens endoplasmic reticulum metallopeptidase 1 (ERMP1), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ERMP1 (79956)
Length:
4999
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_929338.2
NBCI Gene record:
ERMP1 (79956)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_929338.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000133828 CCGTGGTTCATCTGATATAAT pLKO.1 4644 3UTR 100% 15.000 21.000 N ERMP1 n/a
2 TRCN0000336764 CCGTGGTTCATCTGATATAAT pLKO_005 4644 3UTR 100% 15.000 21.000 N ERMP1 n/a
3 TRCN0000336766 GGACTTTGCTCGGCGTTTATT pLKO_005 1679 3UTR 100% 15.000 21.000 N ERMP1 n/a
4 TRCN0000336692 CTCGTATTGGCTCAATCATAA pLKO_005 1284 3UTR 100% 13.200 18.480 N ERMP1 n/a
5 TRCN0000136087 GCACCTACGATCTCTTTGTAT pLKO.1 2782 3UTR 100% 5.625 7.875 N ERMP1 n/a
6 TRCN0000336689 GCACCTACGATCTCTTTGTAT pLKO_005 2782 3UTR 100% 5.625 7.875 N ERMP1 n/a
7 TRCN0000134252 CTTCAGATACTGACTTTCGTA pLKO.1 1017 3UTR 100% 3.000 4.200 N ERMP1 n/a
8 TRCN0000336691 TACCTCATCTGGGCAGTATTT pLKO_005 1832 3UTR 100% 0.000 0.000 N ERMP1 n/a
9 TRCN0000134899 CCTGTGTAAACCATTGTCTTT pLKO.1 4764 3UTR 100% 4.950 3.960 N ERMP1 n/a
10 TRCN0000135020 CATCACCAATGTTGTGGTAAA pLKO.1 589 3UTR 100% 10.800 7.560 N ERMP1 n/a
11 TRCN0000138072 GCATGGCAGTTCTGGATAGAA pLKO.1 2616 3UTR 100% 5.625 3.938 N ERMP1 n/a
12 TRCN0000134194 CATTGATTTCTTGGGAGGTTT pLKO.1 550 3UTR 100% 4.950 3.465 N ERMP1 n/a
13 TRCN0000136345 GCCCAAACATAAGACTGGTAA pLKO.1 1357 3UTR 100% 4.950 3.465 N ERMP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_929338.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12649 pDONR223 100% 19% None 1_1804del;2430_2478del;2805_4999del n/a
2 ccsbBroad304_12649 pLX_304 0% 19% V5 1_1804del;2430_2478del;2805_4999del n/a
3 TRCN0000478996 CCCAATGCCATACTCTGATCGGCC pLX_317 41.7% 19% V5 1_1804del;2430_2478del;2805_4999del n/a
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