Transcript: Human XR_946747.2

PREDICTED: Homo sapiens NAD kinase (NADK), transcript variant X10, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NADK (65220)
Length:
1781
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_946747.2
NBCI Gene record:
NADK (65220)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_946747.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000194792 CGCAAATCAGTCGGTTGAAAT pLKO.1 1693 3UTR 100% 13.200 18.480 N NADK n/a
2 TRCN0000037700 CGATGAGACCTGGAGTTACAA pLKO.1 288 3UTR 100% 5.625 7.875 N NADK n/a
3 TRCN0000199808 GCATTGGAACGTCCGGAAGAA pLKO.1 1321 3UTR 100% 4.950 6.930 N NADK n/a
4 TRCN0000037701 TCGAGAAGATTATGATGACAT pLKO.1 696 3UTR 100% 4.950 6.930 N NADK n/a
5 TRCN0000199040 CGTGAGCGACTGGTTTGAGAG pLKO.1 1285 3UTR 100% 1.350 1.890 N NADK n/a
6 TRCN0000230041 AGGAGAACATGATCGTGTATG pLKO_005 596 3UTR 100% 10.800 7.560 N NADK n/a
7 TRCN0000230043 TGCAGTACCAGGTCCTGAATG pLKO_005 1037 3UTR 100% 10.800 7.560 N NADK n/a
8 TRCN0000196568 GATGACATTTCCAATCAGATA pLKO.1 709 3UTR 100% 4.950 3.465 N NADK n/a
9 TRCN0000037702 GCATCAGCATCACTACCTCAT pLKO.1 1230 3UTR 100% 4.050 2.835 N NADK n/a
10 TRCN0000196721 GAATAAGGAATTGAGTCCAGA pLKO.1 234 3UTR 100% 2.640 1.848 N NADK n/a
11 TRCN0000037703 GAGAACTTTCAGTCCCAAGTT pLKO.1 856 3UTR 100% 0.495 0.347 N NADK n/a
12 TRCN0000230042 GTACCTTTCGAGAAGATTATG pLKO_005 689 3UTR 100% 0.000 0.000 N NADK n/a
13 TRCN0000218412 CATTCAGCTTTGAGAACTTTC pLKO_005 845 3UTR 100% 10.800 6.480 N NADK n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_946747.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08892 pDONR223 100% 60.8% None (many diffs) n/a
2 ccsbBroad304_08892 pLX_304 0% 60.8% V5 (many diffs) n/a
3 TRCN0000471738 TACAGAGCCGCCAGAGATGGGTGG pLX_317 2.2% 60.8% V5 (many diffs) n/a
4 ccsbBroadEn_15141 pDONR223 0% 60.8% None (many diffs) n/a
5 ccsbBroad304_15141 pLX_304 0% 60.8% V5 (many diffs) n/a
6 TRCN0000474095 TAATGCGGTTTCATTAGCGCGCCT pLX_317 33.7% 60.8% V5 (many diffs) n/a
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