Transcript: Human XR_950856.3

PREDICTED: Homo sapiens RNA exonuclease 5 (REXO5), transcript variant X8, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
REXO5 (81691)
Length:
2740
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_950856.3
NBCI Gene record:
REXO5 (81691)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_950856.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000049736 GCTCGGTATTTCCTTAAGCAT pLKO.1 1351 3UTR 100% 3.000 4.200 N REXO5 n/a
2 TRCN0000290755 GCTCGGTATTTCCTTAAGCAT pLKO_005 1351 3UTR 100% 3.000 4.200 N REXO5 n/a
3 TRCN0000310312 AGGCCAAGAAAGCCCGCTTAT pLKO_005 356 3UTR 100% 10.800 7.560 N REXO5 n/a
4 TRCN0000296682 TAGAATCCTTGGATGGTATTC pLKO_005 1903 3UTR 100% 10.800 7.560 N REXO5 n/a
5 TRCN0000049734 GCCTTCTGACAAAGGAGGAAA pLKO.1 794 3UTR 100% 4.950 3.465 N REXO5 n/a
6 TRCN0000290753 GCCTTCTGACAAAGGAGGAAA pLKO_005 794 3UTR 100% 4.950 3.465 N REXO5 n/a
7 TRCN0000049737 GCTGTGTGAATTGCTGAAGTA pLKO.1 420 3UTR 100% 4.950 3.465 N REXO5 n/a
8 TRCN0000049733 GCCATGTTTCCATGTGCCATT pLKO.1 2561 3UTR 100% 4.050 2.835 N REXO5 n/a
9 TRCN0000049735 GCTGTGATCTTGCCTAAAGAT pLKO.1 2106 3UTR 100% 0.563 0.394 N REXO5 n/a
10 TRCN0000290754 GCTGTGATCTTGCCTAAAGAT pLKO_005 2106 3UTR 100% 0.563 0.394 N REXO5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_950856.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09081 pDONR223 100% 84.7% None (many diffs) n/a
2 ccsbBroad304_09081 pLX_304 0% 84.7% V5 (many diffs) n/a
3 TRCN0000466974 GCGCCCTTACAGAGCGCGTTGTAT pLX_317 15.1% 84.7% V5 (many diffs) n/a
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