Construct: ORF TRCN0000465220
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009163.1_s317c1
- Derived from:
- ccsbBroadEn_15129
- DNA Barcode:
- ATAAAGCACCCGCTCCGACAGGGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CELF6 (60677)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465220
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 60677 | CELF6 | CUGBP Elav-like family memb... | NM_001172685.1 | 90.8% | 88.9% | (many diffs) |
| 2 | human | 60677 | CELF6 | CUGBP Elav-like family memb... | NM_052840.5 | 75.1% | 72.4% | (many diffs) |
| 3 | human | 60677 | CELF6 | CUGBP Elav-like family memb... | NM_001172684.1 | 69.5% | 66.8% | (many diffs) |
| 4 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | XM_006511543.2 | 84.6% | 90% | (many diffs) |
| 5 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | XM_006511544.2 | 84.6% | 90% | (many diffs) |
| 6 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | XM_006511545.2 | 84.6% | 90% | (many diffs) |
| 7 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | XM_011242834.2 | 84.6% | 90% | (many diffs) |
| 8 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | XM_017313681.1 | 81.6% | 88% | (many diffs) |
| 9 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | XM_006511546.2 | 79.7% | 85.1% | (many diffs) |
| 10 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | NM_001311092.1 | 79.4% | 84.9% | (many diffs) |
| 11 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | XM_006511540.3 | 64.8% | 68.7% | (many diffs) |
| 12 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | NM_175235.3 | 60.9% | 65% | (many diffs) |
| 13 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | XM_006511541.3 | 60.7% | 64.8% | (many diffs) |
| 14 | mouse | 76183 | Celf6 | CUGBP, Elav-like family mem... | XM_006511542.3 | 52.7% | 56.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1170
- ORF length:
- 1104
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgat ctcagatccc ccctcaaaca acagctggaa ctctgttctc tatcttctag 121 aggaccgaaa gctgtttgtg gggatgctgg gcaagcagca gggtgaggag gacgtcagac 181 gcctgttcca gccctttggc cacatcgagg agtgcacggt cctgcggagt cctgacggca 241 ccagtaaagg ctgtgccttt gtgaagttcg ggagtcaagg ggaagctcag gcggccatcc 301 ggggtctgca cggcagccgg accatggcgg gcgcctcgtc cagcctcgtg gtcaagctgg 361 cggacaccga ccgggagcgc gcgctgcggc ggatgcagca gatggccggc cacctgggcg 421 ccttccaccc cgcgccactg ccgctagggg cctgcggcgc ctacaccacg gcgatcctgc 481 agcaccaggc ggccctgctg gcggcggcac agggcccagg cctaggcccg gtggcggcag 541 tggcggccca gatgcaacac gtggcggcct ttagcctggt agctgcgcct ctgttgcccg 601 cggcagcagc caactccccg cctggcagcg gccctggcac cctcccaggt cttccggcgc 661 ccatcggggt caatggattc ggccctctga ccccccagac caatggccag ccgggctccg 721 acacgctcta caataacggg ctctcccctt atccagccca gagccccggc gtggctgacc 781 ccctgcagca ggcctacgct gggatgcacc actacgcagc agcctatccg tcggcctatg 841 ccccagtgag cacagctttt ccccagcagc cttcagccct gccccagcag cagagagaag 901 gccccgaagg ctgtaacctc ttcatctatc acctgcctca ggagtttggt gatgcggaac 961 tcatacagac attcctgccc tttGGAGCCG TTGTCTCTGC TAAAGTCTTT GTGGATCGAG 1021 CCACCAACCA GAGCAAGTGT TTTGGGTTTG TTAGTTTTGA CAATCCAACT AGTGCCCAGA 1081 CTGCTATTCA GGCGATGAAT GGCTTTCAAA TTGGCATGAA GAGGCTCAAG GTCCAGCTAA 1141 AGCGGCCCAA GGATGCCAAC CGGCCTTACT GCCCAACTTT CTTGTACAAA GTGGTTGATA 1201 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 1261 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAATAAA 1321 GCACCCGCTC CGACAGGGAA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 1381 tgaaagatt