Construct: ORF TRCN0000465231
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017838.2_s317c1
- Derived from:
- ccsbBroadEn_01156
- DNA Barcode:
- TTTGATACAAACCTCAAATCAGCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDK17 (5128)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465231
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5128 | CDK17 | cyclin dependent kinase 17 | NM_002595.5 | 100% | 100% | |
| 2 | human | 5128 | CDK17 | cyclin dependent kinase 17 | XM_017019405.1 | 100% | 100% | |
| 3 | human | 5128 | CDK17 | cyclin dependent kinase 17 | XM_017019406.1 | 100% | 100% | |
| 4 | human | 5128 | CDK17 | cyclin dependent kinase 17 | NM_001170464.3 | 97.9% | 96.4% | (many diffs) |
| 5 | human | 5128 | CDK17 | cyclin dependent kinase 17 | XM_017019407.2 | 95.9% | 95.9% | 809_810ins63 |
| 6 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | NM_146239.2 | 90.5% | 98.6% | (many diffs) |
| 7 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XM_006513627.2 | 90.5% | 98.6% | (many diffs) |
| 8 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XM_011243447.2 | 90.5% | 98.6% | (many diffs) |
| 9 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XM_011243446.2 | 88.3% | 96.3% | (many diffs) |
| 10 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XM_006513626.2 | 87.8% | 95.7% | (many diffs) |
| 11 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XR_380395.3 | 64.7% | (many diffs) | |
| 12 | mouse | 237459 | Cdk17 | cyclin-dependent kinase 17 | XR_380396.3 | 28.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1635
- ORF length:
- 1569
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa aaaatttaag agaaggctat ccctcacact ccgaggaagt cagactattg 121 atgaatcatt gtctgaattg gctgaacaaa tgactattga agaaaacagc agcaaggata 181 atgagcctat tgtgaagaat ggcaggcctc caacgtctca cagtatgcat tccttcctcc 241 accagtacac aggatctttc aagaagcccc cattgcggag accacacagt gttattggag 301 ggagccttgg ctccttcatg gcaatgccca gaaatggaag cagattagat attgttcatg 361 aaaatctaaa aatgggatca gatggtgaga gtgaccaagc ttctgggaca tcatctgatg 421 aagtccagtc acctacaggt gtttgtctca gaaatcgtat acatagacgg atctcaatgg 481 aggatttaaa taagcggtta tcactgcctg cagacatcag aatacctgat ggatatcttg 541 aaaagttgca gataaacagt ccaccatttg accaaccaat gagtcgaagg tctcgtagag 601 cttccttatc agaaattggc tttggaaaaa tggaaaccta catcaaattg gaaaagcttg 661 gagagggtac atatgcaaca gtatataaag gaagaagtaa attgacagag aatttggtgg 721 cattaaaaga gatccgattg gaacatgaag aaggtgcacc ctgcacagct ataagagaag 781 tttcactatt aaaggattta aaacatgcaa atatagtaac cttacatgac attgttcaca 841 cagataaatc cttgactttg gtgtttgagt atctggataa agacctgaaa cagtacatgg 901 atgactgtgg aaacatcatg agtatgcaca acgtaaagct gtttctgtac caaattctac 961 gtggtttggc atattgccat agaagaaagg tattgcatcg agacttgaaa ccacagaacc 1021 tcctcattaa tgagaaagga gaattaaagc tagcagattt tggactagcc cgagccaagt 1081 cagttcccac aaagacctac tcaaatgaag ttgtcacact atggtaccgg ccacctgatg 1141 tgcttcttgg ttcctcggag tactcaacac agattgacat gtggggtgtt ggttgcattt 1201 tctttgaaat ggcttctgga agacctttat ttccaggatc aaccgtggaa gatgaactgc 1261 acttaatttt ccgactgcta ggaactccat ctcaggaaac ttggccaggt atttcttcaa 1321 atgaggagtt caagaactac aactttccaa aatataaacc acagcctcta attaaccacg 1381 cacccaggtt agactctgaa ggaattgagt tgataacaaa atTTCTTCAG TATGAATCTA 1441 AGAAAAGGGT TTCAGCTGAA GAGGCCATGA AACATGTGTA CTTTCGAAGT CTGGGACCAA 1501 GAATACATGC TTTACCAGAA AGTGTATCAA TATTCAGTTT GAAAGAGATT CAGTTGCAAA 1561 AGGACCCGGG TTTTCGAAAT TCTTCTTATC CAGAGACAGG ACATGGGAAG AACAGAAGAC 1621 AGAGCATGCT CTTTTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 1681 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 1741 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TTTGATACAA ACCTCAAATC 1801 AGCCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt