Transcript: Mouse XR_380396.3

PREDICTED: Mus musculus cyclin-dependent kinase 17 (Cdk17), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cdk17 (237459)
Length:
4892
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_380396.3
NBCI Gene record:
Cdk17 (237459)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_380396.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000362229 ACAAGCCACAACCTCTAATTA pLKO_005 1627 3UTR 100% 15.000 21.000 N Cdk17 n/a
2 TRCN0000023170 GCCTCAGAAATCGTATACATA pLKO.1 718 3UTR 100% 5.625 7.875 N Cdk17 n/a
3 TRCN0000023171 CCCACAAAGACCTACTCAAAT pLKO.1 1359 3UTR 100% 13.200 10.560 N Cdk17 n/a
4 TRCN0000362154 TTGCCCGAGAGCGTATCAATA pLKO_005 1785 3UTR 100% 13.200 10.560 N Cdk17 n/a
5 TRCN0000362152 GTGCACCCTGTACAGCTATAA pLKO_005 1027 3UTR 100% 13.200 9.240 N Cdk17 n/a
6 TRCN0000023169 CCAGGTTAGATTCTGAAGGAA pLKO.1 1657 3UTR 100% 3.000 2.100 N Cdk17 n/a
7 TRCN0000023173 GCAGACATCAGGATACCTGAT pLKO.1 783 3UTR 100% 0.405 0.284 N Cdk17 n/a
8 TRCN0000023172 CCAGGTGTTTCTTCAAATGAT pLKO.1 1578 3UTR 100% 5.625 3.375 N Cdk17 n/a
9 TRCN0000106535 GCCTGGTCTACAAAGTGAGTT pLKO.1 4857 3UTR 100% 4.950 2.475 Y Gad2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_380396.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01156 pDONR223 100% 28.8% None (many diffs) n/a
2 ccsbBroad304_01156 pLX_304 0% 28.8% V5 (many diffs) n/a
3 TRCN0000465231 TTTGATACAAACCTCAAATCAGCC pLX_317 14% 28.8% V5 (many diffs) n/a
4 ccsbBroadEn_14731 pDONR223 0% 28.8% None (many diffs) n/a
5 ccsbBroad304_14731 pLX_304 0% 28.8% V5 (many diffs) n/a
6 TRCN0000468143 AAGTCCCTTTCATCCGCTTGAGTT pLX_317 26.5% 28.8% V5 (many diffs) n/a
7 TRCN0000488011 TCACCTCCAGCAGAACGCTGCTGA pLX_317 21.5% 28.8% V5 (not translated due to prior stop codon) (many diffs) n/a
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