Construct: ORF TRCN0000465420

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008522.1_s317c1
Derived from:
ccsbBroadEn_09117
DNA Barcode:
AATATCTCAGCGAGGGGATTAATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYT16 (83851)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465420
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83851 SYT16 synaptotagmin 16 NM_001367656.1 99.9% 99.8% 29T>C
2 human 83851 SYT16 synaptotagmin 16 NM_001367661.1 99.9% 99.8% 29T>C
3 human 83851 SYT16 synaptotagmin 16 NM_001367663.1 99.9% 99.8% 29T>C
4 human 83851 SYT16 synaptotagmin 16 XM_006720272.3 99.9% 99.8% 29T>C
5 human 83851 SYT16 synaptotagmin 16 XM_024449720.1 99.9% 99.8% 29T>C
6 human 83851 SYT16 synaptotagmin 16 XM_024449721.1 99.9% 99.8% 29T>C
7 human 83851 SYT16 synaptotagmin 16 XM_024449723.1 99.9% 99.8% 29T>C
8 human 83851 SYT16 synaptotagmin 16 XM_024449724.1 99.9% 99.8% 29T>C
9 human 83851 SYT16 synaptotagmin 16 XM_024449725.1 88% 87.7% (many diffs)
10 human 83851 SYT16 synaptotagmin 16 XM_024449726.1 84.9% 84% (many diffs)
11 human 83851 SYT16 synaptotagmin 16 XM_024449727.1 84% 83.7% (many diffs)
12 human 83851 SYT16 synaptotagmin 16 NM_001367652.1 78.2% 71% (many diffs)
13 human 83851 SYT16 synaptotagmin 16 NM_001367659.1 78.1% 71.8% (many diffs)
14 human 83851 SYT16 synaptotagmin 16 XM_011537227.2 75.8% 72.9% (many diffs)
15 human 83851 SYT16 synaptotagmin 16 NM_001367657.1 68.4% 63.8% (many diffs)
16 human 83851 SYT16 synaptotagmin 16 XR_002957566.1 68.1% (many diffs)
17 human 83851 SYT16 synaptotagmin 16 NM_001367654.1 67.3% 62.4% (many diffs)
18 human 83851 SYT16 synaptotagmin 16 XM_011537229.2 64.1% 62.7% (many diffs)
19 human 83851 SYT16 synaptotagmin 16 XM_017021697.2 62.6% 55.6% (many diffs)
20 human 83851 SYT16 synaptotagmin 16 NM_001367650.1 52.5% 52.5% 0_1ins918
21 human 83851 SYT16 synaptotagmin 16 XM_024449728.1 52.5% 52.5% 0_1ins918
22 human 83851 SYT16 synaptotagmin 16 XM_024449729.1 52.5% 52.5% 0_1ins918
23 human 83851 SYT16 synaptotagmin 16 XM_024449730.1 52.5% 52.5% 0_1ins918
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2004
ORF length:
1935
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggtgttggcc atggcgtctc aggatgctca gaacttcttc cagcctttct
121cttcctggat atctcgggtt tatgaagctc tccagcaagc aggagatatg ttatctgctt
181cgctggttaa cataagcaaa caagactcta aattgagtga caaactagat caggacttag
241ataatattca gattcaggaa acgtactttg aagatgaaga acaagacaat gattggagtc
301aagaggatgc aaattccttg tttcttgaag tggatcattt ctcatgttgt aatagtgatt
361tgcaggactc tgcccaaaat tcaagcccaa gccttagcca acatgcaaag gactcatgtt
421ccacaatgtc ccagtggccc aattgggcca gtgatgaccg caagttacca catgtgcttt
481cttctattgc ggaggaagag catcaccttg aaaagcaaag aagtggcctt caacatggct
541ttgacagcca gctccctggt actttagaaa ctgttaatgg aaaaaagcaa gtcaacagct
601ttggggatga cgaagagctg tccacatctt ctgacagtga cgaggaggtg atcaaacaat
661ttgagatttc cgtgtcccgg tcccagagtt tccgttcagt gacatctgag aaaggaaagc
721agacaggatt ggagcagaaa ccaaaattca gccgttcgtt gttgacacac ggagaagatg
781gcacagaagt atctgcctgc gaagatttgg atggagccag ccaacggcgt tattctgaga
841atctctccta cggtgaagat gaccacatcc ctgctcactc acagtcccca tgtgaaagag
901gggatgccaa acaccacggc acatctcacc aagagtccag tgtggtccaa agcctcaggc
961gccaatccac agagggcagc ttggagatgg agacagcttt taatagccgg ggatttgaag
1021attcctatgc cactgacagc tcctccatgt ggagtccaga ggaacaggac aggaccaatt
1081tgcaggtgcc atccggggtc tcagagccca tctcaaagtg tggtgaccta gatgtcatct
1141ttgaatatag agccgccagc cagaagctca cagtgaccat tgtgagggca cagggcctcc
1201cagataagga ccgaagtggt gtcaactcct ggcaagttca tgtagtgctg ctgcctggta
1261agaaacacag gggcaggacg aacatacaga gagggcccaa ccccgtcttc agggagaagg
1321tcacctttgc caagctggag cccagagatg tggctgcctg tgctgtccgc ttccgcctgt
1381acgctgcccg gaagatgacc cgagagagaa tgatgggaga gaaactattc tatctcagcc
1441acctgcaccc agaaggggaa atgaaagtga ctctggttct ggagccaaga agtaatataa
1501gcagtggagg gtctccgctc agcccatctg cggtttctca cagtgatagt acttcatcca
1561cgcagtcgct gtctcatgga ggggcgccag agctgttggt ggggctctcg tacaatgcca
1621caacggggcg attatctgtg gaaatgatca aaggcagcca tttccgaaac ctcgctgtta
1681accgagcacc TGATACATAT GGAAAACTCT TTCTCCTCAA TTCTGTGGGT CAAGAGATGT
1741CCCGTTGCAA GACGTCCATT CGGCGTGGTC AGCCCAATCC TGTCTATAAG GAGACCTTTG
1801TTTTCCAGGT GGCCCTCTTT CAGCTGTCTG ATGTCACGTT GATGATTTCC GTTTATAACA
1861GGCGTACTAT GAAGCGTAAA GAGATGATTG GCTGGATTGC CCTGGGCCAG AACAGCAGTG
1921GAGAGGAGGA ACAAGATCAC TGGGAGGAGA TGAAGGAAAC CAAAGGCCAG CAGATCTGCA
1981GATGGCACAC TTTGCTGGAA TCCTTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
2041AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
2101TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA ATATCTCAGC
2161GAGGGGATTA ATAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
2221att

Download FASTA (ORF) (Full)