Construct: ORF TRCN0000465452

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001434.1_s317c1
Derived from:
ccsbBroadEn_01283
DNA Barcode:
ACTCTCTGTTATTACCTATAAACG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRKCE (5581)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465452
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5581 PRKCE protein kinase C epsilon NM_005400.3 100% 100%
2 human 5581 PRKCE protein kinase C epsilon XM_005264428.1 100% 100%
3 human 5581 PRKCE protein kinase C epsilon XM_011532971.3 86% 84.1% (many diffs)
4 human 5581 PRKCE protein kinase C epsilon XM_011532975.3 86% 84.1% (many diffs)
5 human 5581 PRKCE protein kinase C epsilon XM_017004486.2 86% 84.1% (many diffs)
6 human 5581 PRKCE protein kinase C epsilon XM_011532978.2 84.3% 84.2% 1_1delAins345;4_5delCA
7 human 5581 PRKCE protein kinase C epsilon XM_017004487.2 84.3% 84.2% 1_1delAins345;4_5delCA
8 human 5581 PRKCE protein kinase C epsilon XM_017004488.2 84.3% 84.2% 1_1delAins345;4_5delCA
9 human 5581 PRKCE protein kinase C epsilon XM_011532980.3 79.6% 79.6% 0_1ins450
10 human 5581 PRKCE protein kinase C epsilon XM_011532981.3 79.6% 79.6% 0_1ins450
11 human 5581 PRKCE protein kinase C epsilon XM_017004489.2 79.6% 79.6% 0_1ins450
12 human 5581 PRKCE protein kinase C epsilon XM_017004490.2 79.6% 79.6% 0_1ins450
13 human 5581 PRKCE protein kinase C epsilon XM_017004491.2 79.6% 79.6% 0_1ins450
14 human 5581 PRKCE protein kinase C epsilon XM_024452991.1 79.6% 79.6% 0_1ins450
15 human 5581 PRKCE protein kinase C epsilon XM_024452992.1 79.6% 79.6% 0_1ins450
16 human 5581 PRKCE protein kinase C epsilon XM_011532982.2 67.4% 67.4% 0_1ins720
17 human 5581 PRKCE protein kinase C epsilon XM_005264431.4 65.9% 65.2% (many diffs)
18 human 5581 PRKCE protein kinase C epsilon XM_017004492.2 65.1% 64.9% (many diffs)
19 human 5581 PRKCE protein kinase C epsilon XM_006712050.3 62.4% 62.4% 0_1ins831
20 human 5581 PRKCE protein kinase C epsilon XM_011532983.2 58.2% 57.2% (many diffs)
21 human 5581 PRKCE protein kinase C epsilon XR_939695.2 54.7% (many diffs)
22 human 5581 PRKCE protein kinase C epsilon XR_001738846.2 18% (many diffs)
23 mouse 18754 Prkce protein kinase C, epsilon NM_011104.3 91% 97.9% (many diffs)
24 mouse 18754 Prkce protein kinase C, epsilon XM_017317328.1 85.6% 91.7% (many diffs)
25 mouse 18754 Prkce protein kinase C, epsilon XM_006523833.2 74.3% 79.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2280
ORF length:
2211
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggtagtgttc aatggccttc ttaagatcaa aatctgcgag gccgtgagct
121tgaagcccac agcctggtcg ctgcgccatg cggtgggacc ccggccgcag actttccttc
181tcgaccccta cattgccctc aatgtggacg actcgcgcat cggccaaacg gccaccaagc
241agaagaccaa cagcccggcc tggcacgacg agttcgtcac cgatgtgtgc aacggacgca
301agatcgagct ggctgtcttt cacgatgccc ccataggcta cgacgacttc gtggccaact
361gcaccatcca gtttgaggag ctgctgcaga acgggagccg ccacttcgag gactggattg
421atctggagcc agaaggaaga gtgtatgtga tcatcgatct ctcagggtcg tcgggtgaag
481cccctaaaga caatgaagag cgtgtgttca gggaacgcat gcggccgagg aagcggcagg
541gggccgtcag gcgcagggtc catcaggtca acggccacaa gttcatggcc acctatcttc
601ggcagcccac ctactgctcc cattgcagag acttcatctg gggtgtcata ggaaagcagg
661gataccagtg tcaagtctgc acctgcgtgg tccacaagcg gtgccacgag ctcataatca
721caaagtgtgc tgggttaaag aagcaggaga cccccgacca ggtgggctcc cagcggttca
781gcgtcaacat gccccacaag ttcggtatcc acaactacaa ggtccctacc ttctgcgatc
841actgtgggtc cctgctctgg ggactcttgc ggcagggttt gcagtgtaaa gtctgcaaaa
901tgaatgttca ccgtcgatgt gagaccaacg tggctcccaa ctgtggagtg gatgccagag
961gaatcgccaa agtactggcc gacctgggcg ttaccccaga caaaatcacc aacagcggcc
1021agagaaggaa aaagctcatt gctggtgccg agtccccgca gcctgcttct ggaagctcac
1081catctgagga agatcgatcc aagtcagcac ccacctcccc ttgtgaccag gaaataaaag
1141aacttgagaa caacattcgg aaagccttgt catttgacaa ccgaggagag gagcaccggg
1201cagcatcgtc tcctgatggc cagctgatga gccccggtga gaatggcgaa gtccggcaag
1261gccaggccaa gcgcctgggc ctggatgagt tcaacttcat caaggtgttg ggcaaaggca
1321gctttggcaa ggtcatgttg gcagaactca agggcaaaga tgaagtatat gctgtgaagg
1381tcttaaagaa ggacgtcatc cttcaggatg atgacgtgga ctgcacaatg acagagaaga
1441ggattttggc tctggcacgg aaacacccgt accttaccca actctactgc tgcttccaga
1501ccaaggaccg cctctttttc gtcatggaat atgtaaatgg tggagacctc atgtttcaga
1561ttcagcgctc ccgaaaattc gacgagcctc gttcacggtt ctatgctgca gaggtcacat
1621cggccctcat gttcctccac cagcatggag tcatctacag ggatttgaaa ctggacaaca
1681tccttctgga tgcagaaggt cactgcaagc tggctgactt cgggatgtgc aaggaaggga
1741ttctgaatgg tgtgacgacc accacgttct gtgggactcc tgactacata gctcctgaga
1801tcctgcagga gttggagtat ggcccctccg tggactggtg ggccctgggg gtgctgatgt
1861acgagatgat ggctggacag cctccctttg aggccgacaa tgaggacgac ctatttgagt
1921ccatccTCCA TGACGACGTG CTGTACCCAG TCTGGCTCAG CAAGGAGGCT GTCAGCATCT
1981TGAAAGCTTT CATGACGAAG AATCCCCACA AGCGCCTGGG CTGTGTGGCA TCGCAGAATG
2041GCGAGGACGC CATCAAGCAG CACCCATTCT TCAAAGAGAT TGACTGGGTG CTCCTGGAGC
2101AGAAGAAGAT CAAGCCACCC TTCAAACCAC GCATTAAAAC CAAAAGAGAC GTCAATAATT
2161TTGACCAAGA CTTTACCCGG GAAGAGCCGG TACTCACCCT TGTGGACGAA GCAATTGTAA
2221AGCAGATCAA CCAGGAGGAA TTCAAAGGTT TCTCCTACTT TGGTGAAGAC CTGATGCCCT
2281TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
2341GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
2401TTTATATATC TTGTGGAAAG GACGAACTCT CTGTTATTAC CTATAAACGA CGCGTTAAGT
2461Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)